class MedicalNerModel extends AnnotatorModel[MedicalNerModel] with HasBatchedAnnotate[MedicalNerModel] with WriteTensorflowModel with HasStorageRef with ParamsAndFeaturesWritable with Licensed

Linear Supertypes
Licensed, HasStorageRef, WriteTensorflowModel, HasBatchedAnnotate[MedicalNerModel], AnnotatorModel[MedicalNerModel], CanBeLazy, RawAnnotator[MedicalNerModel], HasOutputAnnotationCol, HasInputAnnotationCols, HasOutputAnnotatorType, ParamsAndFeaturesWritable, HasFeatures, DefaultParamsWritable, MLWritable, Model[MedicalNerModel], Transformer, PipelineStage, Logging, Params, Serializable, Serializable, Identifiable, AnyRef, Any
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Inherited
  1. MedicalNerModel
  2. Licensed
  3. HasStorageRef
  4. WriteTensorflowModel
  5. HasBatchedAnnotate
  6. AnnotatorModel
  7. CanBeLazy
  8. RawAnnotator
  9. HasOutputAnnotationCol
  10. HasInputAnnotationCols
  11. HasOutputAnnotatorType
  12. ParamsAndFeaturesWritable
  13. HasFeatures
  14. DefaultParamsWritable
  15. MLWritable
  16. Model
  17. Transformer
  18. PipelineStage
  19. Logging
  20. Params
  21. Serializable
  22. Serializable
  23. Identifiable
  24. AnyRef
  25. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new MedicalNerModel()
  2. new MedicalNerModel(uid: String)

Type Members

  1. type AnnotationContent = Seq[Row]
    Attributes
    protected
    Definition Classes
    AnnotatorModel
  2. type AnnotatorType = String
    Definition Classes
    HasOutputAnnotatorType

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def $[T](param: Param[T]): T
    Attributes
    protected
    Definition Classes
    Params
  4. def $$[T](feature: StructFeature[T]): T
    Attributes
    protected
    Definition Classes
    HasFeatures
  5. def $$[K, V](feature: MapFeature[K, V]): Map[K, V]
    Attributes
    protected
    Definition Classes
    HasFeatures
  6. def $$[T](feature: SetFeature[T]): Set[T]
    Attributes
    protected
    Definition Classes
    HasFeatures
  7. def $$[T](feature: ArrayFeature[T]): Array[T]
    Attributes
    protected
    Definition Classes
    HasFeatures
  8. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  9. def _transform(dataset: Dataset[_], recursivePipeline: Option[PipelineModel]): DataFrame
    Attributes
    protected
    Definition Classes
    AnnotatorModel
  10. def afterAnnotate(dataset: DataFrame): DataFrame
    Attributes
    protected
    Definition Classes
    AnnotatorModel
  11. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  12. def batchAnnotate(batchedAnnotations: Seq[Array[Annotation]]): Seq[Seq[Annotation]]
    Definition Classes
    MedicalNerModel → HasBatchedAnnotate
  13. def batchProcess(rows: Iterator[_]): Iterator[Row]
    Definition Classes
    HasBatchedAnnotate
  14. val batchSize: IntParam
    Definition Classes
    HasBatchedAnnotate
  15. def beforeAnnotate(dataset: Dataset[_]): Dataset[_]
    Attributes
    protected
    Definition Classes
    MedicalNerModel → AnnotatorModel
  16. final def checkSchema(schema: StructType, inputAnnotatorType: String): Boolean
    Attributes
    protected
    Definition Classes
    HasInputAnnotationCols
  17. val classes: StringArrayParam
  18. final def clear(param: Param[_]): MedicalNerModel.this.type
    Definition Classes
    Params
  19. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  20. val configProtoBytes: IntArrayParam

    ConfigProto from tensorflow, serialized into byte array.

    ConfigProto from tensorflow, serialized into byte array. Get with config_proto.SerializeToString()

  21. def copy(extra: ParamMap): MedicalNerModel
    Definition Classes
    RawAnnotator → Model → Transformer → PipelineStage → Params
  22. def copyValues[T <: Params](to: T, extra: ParamMap): T
    Attributes
    protected
    Definition Classes
    Params
  23. def createDatabaseConnection(database: Name): RocksDBConnection
    Definition Classes
    HasStorageRef
  24. val datasetParams: StructFeature[DatasetEncoderParams]

    datasetParams

  25. final def defaultCopy[T <: Params](extra: ParamMap): T
    Attributes
    protected
    Definition Classes
    Params
  26. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  27. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  28. def explainParam(param: Param[_]): String
    Definition Classes
    Params
  29. def explainParams(): String
    Definition Classes
    Params
  30. def extraValidate(structType: StructType): Boolean
    Attributes
    protected
    Definition Classes
    RawAnnotator
  31. def extraValidateMsg: String
    Attributes
    protected
    Definition Classes
    RawAnnotator
  32. final def extractParamMap(): ParamMap
    Definition Classes
    Params
  33. final def extractParamMap(extra: ParamMap): ParamMap
    Definition Classes
    Params
  34. val features: ArrayBuffer[Feature[_, _, _]]
    Definition Classes
    HasFeatures
  35. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  36. def get[T](feature: StructFeature[T]): Option[T]
    Attributes
    protected
    Definition Classes
    HasFeatures
  37. def get[K, V](feature: MapFeature[K, V]): Option[Map[K, V]]
    Attributes
    protected
    Definition Classes
    HasFeatures
  38. def get[T](feature: SetFeature[T]): Option[Set[T]]
    Attributes
    protected
    Definition Classes
    HasFeatures
  39. def get[T](feature: ArrayFeature[T]): Option[Array[T]]
    Attributes
    protected
    Definition Classes
    HasFeatures
  40. final def get[T](param: Param[T]): Option[T]
    Definition Classes
    Params
  41. def getBatchSize: Int
    Definition Classes
    HasBatchedAnnotate
  42. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  43. def getClasses: Array[String]

    get the tags used to trained this MedicalNerModel

  44. def getConfigProtoBytes: Option[Array[Byte]]

    datasetParams

  45. final def getDefault[T](param: Param[T]): Option[T]
    Definition Classes
    Params
  46. def getIncludeConfidence: Boolean

    whether to include confidence scores in annotation metadata

  47. def getInputCols: Array[String]
    Definition Classes
    HasInputAnnotationCols
  48. def getLazyAnnotator: Boolean
    Definition Classes
    CanBeLazy
  49. def getMinProba: Float

    Minimum probability.

    Minimum probability. Used only if there is no CRF on top of LSTM layer.

  50. def getModelIfNotSet: TensorflowMedicalNer

    ConfigProto from tensorflow, serialized into byte array.

    ConfigProto from tensorflow, serialized into byte array. Get with config_proto.SerializeToString()

  51. final def getOrDefault[T](param: Param[T]): T
    Definition Classes
    Params
  52. final def getOutputCol: String
    Definition Classes
    HasOutputAnnotationCol
  53. def getParam(paramName: String): Param[Any]
    Definition Classes
    Params
  54. def getStorageRef: String
    Definition Classes
    HasStorageRef
  55. final def hasDefault[T](param: Param[T]): Boolean
    Definition Classes
    Params
  56. def hasParam(paramName: String): Boolean
    Definition Classes
    Params
  57. def hasParent: Boolean
    Definition Classes
    Model
  58. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  59. val includeConfidence: BooleanParam

    whether to include confidence scores in annotation metadata

  60. def initializeLogIfNecessary(isInterpreter: Boolean, silent: Boolean): Boolean
    Attributes
    protected
    Definition Classes
    Logging
  61. def initializeLogIfNecessary(isInterpreter: Boolean): Unit
    Attributes
    protected
    Definition Classes
    Logging
  62. val inputAnnotatorTypes: Array[String]

    Required input Annotators coulumns, expects DOCUMENT, TOKEN, WORD_EMBEDDINGS

    Required input Annotators coulumns, expects DOCUMENT, TOKEN, WORD_EMBEDDINGS

    Definition Classes
    MedicalNerModel → HasInputAnnotationCols
  63. final val inputCols: StringArrayParam
    Attributes
    protected
    Definition Classes
    HasInputAnnotationCols
  64. final def isDefined(param: Param[_]): Boolean
    Definition Classes
    Params
  65. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  66. final def isSet(param: Param[_]): Boolean
    Definition Classes
    Params
  67. def isTraceEnabled(): Boolean
    Attributes
    protected
    Definition Classes
    Logging
  68. val lazyAnnotator: BooleanParam
    Definition Classes
    CanBeLazy
  69. def log: Logger
    Attributes
    protected
    Definition Classes
    Logging
  70. def logDebug(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  71. def logDebug(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  72. def logError(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  73. def logError(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  74. def logInfo(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  75. def logInfo(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  76. def logName: String
    Attributes
    protected
    Definition Classes
    Logging
  77. def logTrace(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  78. def logTrace(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  79. def logWarning(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  80. def logWarning(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  81. val minProba: FloatParam

    Minimum probability.

    Minimum probability. Used only if there is no CRF on top of LSTM layer.

  82. def msgHelper(schema: StructType): String
    Attributes
    protected
    Definition Classes
    HasInputAnnotationCols
  83. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  84. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  85. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  86. def onWrite(path: String, spark: SparkSession): Unit
    Definition Classes
    MedicalNerModel → ParamsAndFeaturesWritable
  87. val outputAnnotatorType: String

    Output Annnotator type : NAMED_ENTITY

    Output Annnotator type : NAMED_ENTITY

    Definition Classes
    MedicalNerModel → HasOutputAnnotatorType
  88. final val outputCol: Param[String]
    Attributes
    protected
    Definition Classes
    HasOutputAnnotationCol
  89. lazy val params: Array[Param[_]]
    Definition Classes
    Params
  90. var parent: Estimator[MedicalNerModel]
    Definition Classes
    Model
  91. def save(path: String): Unit
    Definition Classes
    MLWritable
    Annotations
    @Since( "1.6.0" ) @throws( ... )
  92. def set[T](feature: StructFeature[T], value: T): MedicalNerModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  93. def set[K, V](feature: MapFeature[K, V], value: Map[K, V]): MedicalNerModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  94. def set[T](feature: SetFeature[T], value: Set[T]): MedicalNerModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  95. def set[T](feature: ArrayFeature[T], value: Array[T]): MedicalNerModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  96. final def set(paramPair: ParamPair[_]): MedicalNerModel.this.type
    Attributes
    protected
    Definition Classes
    Params
  97. final def set(param: String, value: Any): MedicalNerModel.this.type
    Attributes
    protected
    Definition Classes
    Params
  98. final def set[T](param: Param[T], value: T): MedicalNerModel.this.type
    Definition Classes
    Params
  99. def setBatchSize(size: Int): MedicalNerModel.this.type
    Definition Classes
    HasBatchedAnnotate
  100. def setConfigProtoBytes(bytes: Array[Int]): MedicalNerModel.this.type

    ConfigProto from tensorflow, serialized into byte array.

    ConfigProto from tensorflow, serialized into byte array. Get with config_proto.SerializeToString()

  101. def setDatasetParams(params: DatasetEncoderParams): MedicalNerModel.this.type

    datasetParams

  102. def setDefault[T](feature: StructFeature[T], value: () ⇒ T): MedicalNerModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  103. def setDefault[K, V](feature: MapFeature[K, V], value: () ⇒ Map[K, V]): MedicalNerModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  104. def setDefault[T](feature: SetFeature[T], value: () ⇒ Set[T]): MedicalNerModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  105. def setDefault[T](feature: ArrayFeature[T], value: () ⇒ Array[T]): MedicalNerModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  106. final def setDefault(paramPairs: ParamPair[_]*): MedicalNerModel.this.type
    Attributes
    protected
    Definition Classes
    Params
  107. final def setDefault[T](param: Param[T], value: T): MedicalNerModel.this.type
    Attributes
    protected
    Definition Classes
    Params
  108. def setIncludeConfidence(value: Boolean): MedicalNerModel.this.type

    whether to include confidence scores in annotation metadata

  109. final def setInputCols(value: String*): MedicalNerModel.this.type
    Definition Classes
    HasInputAnnotationCols
  110. final def setInputCols(value: Array[String]): MedicalNerModel.this.type
    Definition Classes
    HasInputAnnotationCols
  111. def setLazyAnnotator(value: Boolean): MedicalNerModel.this.type
    Definition Classes
    CanBeLazy
  112. def setMinProbability(minProba: Float): MedicalNerModel.this.type

    Minimum probability.

    Minimum probability. Used only if there is no CRF on top of LSTM layer.

  113. def setModelIfNotSet(spark: SparkSession, tf: TensorflowWrapper): MedicalNerModel.this.type
  114. final def setOutputCol(value: String): MedicalNerModel.this.type
    Definition Classes
    HasOutputAnnotationCol
  115. def setParent(parent: Estimator[MedicalNerModel]): MedicalNerModel
    Definition Classes
    Model
  116. def setStorageRef(value: String): MedicalNerModel.this.type
    Definition Classes
    HasStorageRef
  117. val storageRef: Param[String]
    Definition Classes
    HasStorageRef
  118. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  119. def tag(tokenized: Array[Array[WordpieceEmbeddingsSentence]]): Seq[Array[NerTaggedSentence]]
  120. def toString(): String
    Definition Classes
    Identifiable → AnyRef → Any
  121. final def transform(dataset: Dataset[_]): DataFrame
    Definition Classes
    AnnotatorModel → Transformer
  122. def transform(dataset: Dataset[_], paramMap: ParamMap): DataFrame
    Definition Classes
    Transformer
    Annotations
    @Since( "2.0.0" )
  123. def transform(dataset: Dataset[_], firstParamPair: ParamPair[_], otherParamPairs: ParamPair[_]*): DataFrame
    Definition Classes
    Transformer
    Annotations
    @Since( "2.0.0" ) @varargs()
  124. final def transformSchema(schema: StructType): StructType
    Definition Classes
    RawAnnotator → PipelineStage
  125. def transformSchema(schema: StructType, logging: Boolean): StructType
    Attributes
    protected
    Definition Classes
    PipelineStage
    Annotations
    @DeveloperApi()
  126. val uid: String
    Definition Classes
    MedicalNerModel → Identifiable
  127. def validate(schema: StructType): Boolean
    Attributes
    protected
    Definition Classes
    RawAnnotator
  128. def validateStorageRef(dataset: Dataset[_], inputCols: Array[String], annotatorType: String): Unit
    Definition Classes
    HasStorageRef
  129. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  130. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  131. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  132. def wrapColumnMetadata(col: Column): Column
    Attributes
    protected
    Definition Classes
    RawAnnotator
  133. def write: MLWriter
    Definition Classes
    ParamsAndFeaturesWritable → DefaultParamsWritable → MLWritable
  134. def writeTensorflowHub(path: String, tfPath: String, spark: SparkSession, suffix: String): Unit
    Definition Classes
    WriteTensorflowModel
  135. def writeTensorflowModel(path: String, spark: SparkSession, tensorflow: TensorflowWrapper, suffix: String, filename: String, configProtoBytes: Option[Array[Byte]]): Unit
    Definition Classes
    WriteTensorflowModel
  136. def writeTensorflowModelV2(path: String, spark: SparkSession, tensorflow: TensorflowWrapper, suffix: String, filename: String, configProtoBytes: Option[Array[Byte]]): Unit
    Definition Classes
    WriteTensorflowModel

Inherited from Licensed

Inherited from HasStorageRef

Inherited from WriteTensorflowModel

Inherited from HasBatchedAnnotate[MedicalNerModel]

Inherited from AnnotatorModel[MedicalNerModel]

Inherited from CanBeLazy

Inherited from RawAnnotator[MedicalNerModel]

Inherited from HasOutputAnnotationCol

Inherited from HasInputAnnotationCols

Inherited from HasOutputAnnotatorType

Inherited from ParamsAndFeaturesWritable

Inherited from HasFeatures

Inherited from DefaultParamsWritable

Inherited from MLWritable

Inherited from Model[MedicalNerModel]

Inherited from Transformer

Inherited from PipelineStage

Inherited from Logging

Inherited from Params

Inherited from Serializable

Inherited from Serializable

Inherited from Identifiable

Inherited from AnyRef

Inherited from Any

anno

getParam

param

setParam

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