class MedicalBertForTokenClassifier extends AnnotatorModel[MedicalBertForTokenClassifier] with HasBatchedAnnotate[MedicalBertForTokenClassifier] with WriteTensorflowModel with WriteOnnxModel with HasCaseSensitiveProperties with HasEngine with CheckLicense

Linear Supertypes
CheckLicense, HasEngine, HasCaseSensitiveProperties, WriteOnnxModel, WriteTensorflowModel, HasBatchedAnnotate[MedicalBertForTokenClassifier], AnnotatorModel[MedicalBertForTokenClassifier], CanBeLazy, RawAnnotator[MedicalBertForTokenClassifier], HasOutputAnnotationCol, HasInputAnnotationCols, HasOutputAnnotatorType, ParamsAndFeaturesWritable, HasFeatures, DefaultParamsWritable, MLWritable, Model[MedicalBertForTokenClassifier], Transformer, PipelineStage, Logging, Params, Serializable, Serializable, Identifiable, AnyRef, Any
Known Subclasses
FinanceBertForTokenClassification, LegalBertForTokenClassification
Ordering
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  3. By Inheritance
Inherited
  1. MedicalBertForTokenClassifier
  2. CheckLicense
  3. HasEngine
  4. HasCaseSensitiveProperties
  5. WriteOnnxModel
  6. WriteTensorflowModel
  7. HasBatchedAnnotate
  8. AnnotatorModel
  9. CanBeLazy
  10. RawAnnotator
  11. HasOutputAnnotationCol
  12. HasInputAnnotationCols
  13. HasOutputAnnotatorType
  14. ParamsAndFeaturesWritable
  15. HasFeatures
  16. DefaultParamsWritable
  17. MLWritable
  18. Model
  19. Transformer
  20. PipelineStage
  21. Logging
  22. Params
  23. Serializable
  24. Serializable
  25. Identifiable
  26. AnyRef
  27. Any
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Visibility
  1. Public
  2. All

Instance Constructors

  1. new MedicalBertForTokenClassifier()

    Annotator reference id.

    Annotator reference id. Used to identify elements in metadata or to refer to this annotator type

  2. new MedicalBertForTokenClassifier(uid: String)

Type Members

  1. type AnnotationContent = Seq[Row]
    Attributes
    protected
    Definition Classes
    AnnotatorModel
  2. type AnnotatorType = String
    Definition Classes
    HasOutputAnnotatorType

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def $[T](param: Param[T]): T
    Attributes
    protected
    Definition Classes
    Params
  4. def $$[T](feature: StructFeature[T]): T
    Attributes
    protected
    Definition Classes
    HasFeatures
  5. def $$[K, V](feature: MapFeature[K, V]): Map[K, V]
    Attributes
    protected
    Definition Classes
    HasFeatures
  6. def $$[T](feature: SetFeature[T]): Set[T]
    Attributes
    protected
    Definition Classes
    HasFeatures
  7. def $$[T](feature: ArrayFeature[T]): Array[T]
    Attributes
    protected
    Definition Classes
    HasFeatures
  8. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  9. def _transform(dataset: Dataset[_], recursivePipeline: Option[PipelineModel]): DataFrame
    Attributes
    protected
    Definition Classes
    AnnotatorModel
  10. def afterAnnotate(dataset: DataFrame): DataFrame
    Attributes
    protected
    Definition Classes
    AnnotatorModel
  11. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  12. def batchAnnotate(batchedAnnotations: Seq[Array[Annotation]]): Seq[Seq[Annotation]]

    takes a document and annotations and produces new annotations of this annotator's annotation type

    takes a document and annotations and produces new annotations of this annotator's annotation type

    batchedAnnotations

    Annotations that correspond to inputAnnotationCols generated by previous annotators if any

    returns

    any number of annotations processed for every input annotation. Not necessary one to one relationship

    Definition Classes
    MedicalBertForTokenClassifier → HasBatchedAnnotate
  13. def batchProcess(rows: Iterator[_]): Iterator[Row]
    Definition Classes
    HasBatchedAnnotate
  14. val batchSize: IntParam
    Definition Classes
    HasBatchedAnnotate
  15. def beforeAnnotate(dataset: Dataset[_]): Dataset[_]
    Attributes
    protected
    Definition Classes
    MedicalBertForTokenClassifier → AnnotatorModel
  16. val caseSensitive: BooleanParam
    Definition Classes
    HasCaseSensitiveProperties
  17. final def checkSchema(schema: StructType, inputAnnotatorType: String): Boolean
    Attributes
    protected
    Definition Classes
    HasInputAnnotationCols
  18. def checkValidEnvironment(spark: Option[SparkSession], scopes: Seq[String]): Unit
    Definition Classes
    CheckLicense
  19. def checkValidScope(scope: String): Unit
    Definition Classes
    CheckLicense
  20. def checkValidScopeAndEnvironment(scope: String, spark: Option[SparkSession], checkLp: Boolean): Unit
    Definition Classes
    CheckLicense
  21. def checkValidScopesAndEnvironment(scopes: Seq[String], spark: Option[SparkSession], checkLp: Boolean): Unit
    Definition Classes
    CheckLicense
  22. final def clear(param: Param[_]): MedicalBertForTokenClassifier.this.type
    Definition Classes
    Params
  23. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  24. val configProtoBytes: IntArrayParam

    ConfigProto from tensorflow, serialized into byte array.

    ConfigProto from tensorflow, serialized into byte array. Get with config_proto.SerializeToString()

  25. def copy(extra: ParamMap): MedicalBertForTokenClassifier
    Definition Classes
    RawAnnotator → Model → Transformer → PipelineStage → Params
  26. def copyValues[T <: Params](to: T, extra: ParamMap): T
    Attributes
    protected
    Definition Classes
    Params
  27. final def defaultCopy[T <: Params](extra: ParamMap): T
    Attributes
    protected
    Definition Classes
    Params
  28. val engine: Param[String]
    Definition Classes
    HasEngine
  29. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  30. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  31. def explainParam(param: Param[_]): String
    Definition Classes
    Params
  32. def explainParams(): String
    Definition Classes
    Params
  33. def extraValidate(structType: StructType): Boolean
    Attributes
    protected
    Definition Classes
    RawAnnotator
  34. def extraValidateMsg: String
    Attributes
    protected
    Definition Classes
    RawAnnotator
  35. final def extractParamMap(): ParamMap
    Definition Classes
    Params
  36. final def extractParamMap(extra: ParamMap): ParamMap
    Definition Classes
    Params
  37. val features: ArrayBuffer[Feature[_, _, _]]
    Definition Classes
    HasFeatures
  38. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  39. def get[T](feature: StructFeature[T]): Option[T]
    Attributes
    protected
    Definition Classes
    HasFeatures
  40. def get[K, V](feature: MapFeature[K, V]): Option[Map[K, V]]
    Attributes
    protected
    Definition Classes
    HasFeatures
  41. def get[T](feature: SetFeature[T]): Option[Set[T]]
    Attributes
    protected
    Definition Classes
    HasFeatures
  42. def get[T](feature: ArrayFeature[T]): Option[Array[T]]
    Attributes
    protected
    Definition Classes
    HasFeatures
  43. final def get[T](param: Param[T]): Option[T]
    Definition Classes
    Params
  44. def getBatchSize: Int
    Definition Classes
    HasBatchedAnnotate
  45. def getCaseSensitive: Boolean
    Definition Classes
    HasCaseSensitiveProperties
  46. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  47. def getClasses: Array[String]

    Returns labels used to train this model

  48. def getConfigProtoBytes: Option[Array[Byte]]

  49. final def getDefault[T](param: Param[T]): Option[T]
    Definition Classes
    Params
  50. def getEngine: String
    Definition Classes
    HasEngine
  51. def getInputCols: Array[String]
    Definition Classes
    HasInputAnnotationCols
  52. def getLabels: Map[String, Int]

    Returns the Labels parameter

  53. def getLazyAnnotator: Boolean
    Definition Classes
    CanBeLazy
  54. def getMaxSentenceLength: Int

    Returns the maxSentenceLength parameter

  55. def getModelIfNotSet: MedicalBertClassification

  56. final def getOrDefault[T](param: Param[T]): T
    Definition Classes
    Params
  57. final def getOutputCol: String
    Definition Classes
    HasOutputAnnotationCol
  58. def getParam(paramName: String): Param[Any]
    Definition Classes
    Params
  59. def getSignatures: Option[Map[String, String]]

    Returns the signatures parameter

  60. final def hasDefault[T](param: Param[T]): Boolean
    Definition Classes
    Params
  61. def hasParam(paramName: String): Boolean
    Definition Classes
    Params
  62. def hasParent: Boolean
    Definition Classes
    Model
  63. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  64. def initializeLogIfNecessary(isInterpreter: Boolean, silent: Boolean): Boolean
    Attributes
    protected
    Definition Classes
    Logging
  65. def initializeLogIfNecessary(isInterpreter: Boolean): Unit
    Attributes
    protected
    Definition Classes
    Logging
  66. val inputAnnotatorTypes: Array[String]

    Input Annotator Types: DOCUMENT, TOKEN

    Input Annotator Types: DOCUMENT, TOKEN

    Definition Classes
    MedicalBertForTokenClassifier → HasInputAnnotationCols
  67. final val inputCols: StringArrayParam
    Attributes
    protected
    Definition Classes
    HasInputAnnotationCols
  68. final def isDefined(param: Param[_]): Boolean
    Definition Classes
    Params
  69. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  70. final def isSet(param: Param[_]): Boolean
    Definition Classes
    Params
  71. def isTraceEnabled(): Boolean
    Attributes
    protected
    Definition Classes
    Logging
  72. val labels: MapFeature[String, Int]

    Labels used to decode predicted IDs back to string tags

  73. val lazyAnnotator: BooleanParam
    Definition Classes
    CanBeLazy
  74. def log: Logger
    Attributes
    protected
    Definition Classes
    Logging
  75. def logDebug(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  76. def logDebug(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  77. def logError(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  78. def logError(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  79. def logInfo(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  80. def logInfo(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  81. def logName: String
    Attributes
    protected
    Definition Classes
    Logging
  82. def logTrace(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  83. def logTrace(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  84. def logWarning(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  85. def logWarning(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  86. val maxSentenceLength: IntParam

    Max sentence length to process (Default: 128)

  87. def msgHelper(schema: StructType): String
    Attributes
    protected
    Definition Classes
    HasInputAnnotationCols
  88. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  89. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  90. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  91. def onWrite(path: String, spark: SparkSession): Unit
    Definition Classes
    MedicalBertForTokenClassifier → ParamsAndFeaturesWritable
  92. val optionalInputAnnotatorTypes: Array[String]
    Definition Classes
    HasInputAnnotationCols
  93. val outputAnnotatorType: AnnotatorType

    Output Annotator Types: WORD_EMBEDDINGS

    Output Annotator Types: WORD_EMBEDDINGS

    Definition Classes
    MedicalBertForTokenClassifier → HasOutputAnnotatorType
  94. final val outputCol: Param[String]
    Attributes
    protected
    Definition Classes
    HasOutputAnnotationCol
  95. lazy val params: Array[Param[_]]
    Definition Classes
    Params
  96. var parent: Estimator[MedicalBertForTokenClassifier]
    Definition Classes
    Model
  97. def save(path: String): Unit
    Definition Classes
    MLWritable
    Annotations
    @Since( "1.6.0" ) @throws( ... )
  98. def sentenceEndTokenId: Int

    Returns the end of sentence token ("[SEP]") associated id.

  99. def sentenceStartTokenId: Int

    Returns the start of sentence token ("[CLS]") associated id.

  100. def set[T](feature: StructFeature[T], value: T): MedicalBertForTokenClassifier.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  101. def set[K, V](feature: MapFeature[K, V], value: Map[K, V]): MedicalBertForTokenClassifier.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  102. def set[T](feature: SetFeature[T], value: Set[T]): MedicalBertForTokenClassifier.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  103. def set[T](feature: ArrayFeature[T], value: Array[T]): MedicalBertForTokenClassifier.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  104. final def set(paramPair: ParamPair[_]): MedicalBertForTokenClassifier.this.type
    Attributes
    protected
    Definition Classes
    Params
  105. final def set(param: String, value: Any): MedicalBertForTokenClassifier.this.type
    Attributes
    protected
    Definition Classes
    Params
  106. final def set[T](param: Param[T], value: T): MedicalBertForTokenClassifier.this.type
    Definition Classes
    Params
  107. def setBatchSize(size: Int): MedicalBertForTokenClassifier.this.type
    Definition Classes
    HasBatchedAnnotate
  108. def setCaseSensitive(value: Boolean): MedicalBertForTokenClassifier.this.type
    Definition Classes
    HasCaseSensitiveProperties
  109. def setConfigProtoBytes(bytes: Array[Int]): MedicalBertForTokenClassifier.this.type

    Sets the configProtoBytes parameter

  110. def setDefault[T](feature: StructFeature[T], value: () ⇒ T): MedicalBertForTokenClassifier.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  111. def setDefault[K, V](feature: MapFeature[K, V], value: () ⇒ Map[K, V]): MedicalBertForTokenClassifier.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  112. def setDefault[T](feature: SetFeature[T], value: () ⇒ Set[T]): MedicalBertForTokenClassifier.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  113. def setDefault[T](feature: ArrayFeature[T], value: () ⇒ Array[T]): MedicalBertForTokenClassifier.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  114. final def setDefault(paramPairs: ParamPair[_]*): MedicalBertForTokenClassifier.this.type
    Attributes
    protected
    Definition Classes
    Params
  115. final def setDefault[T](param: Param[T], value: T): MedicalBertForTokenClassifier.this.type
    Attributes
    protected[org.apache.spark.ml]
    Definition Classes
    Params
  116. final def setInputCols(value: String*): MedicalBertForTokenClassifier.this.type
    Definition Classes
    HasInputAnnotationCols
  117. def setInputCols(value: Array[String]): MedicalBertForTokenClassifier.this.type
    Definition Classes
    HasInputAnnotationCols
  118. def setLabels(value: Map[String, Int]): MedicalBertForTokenClassifier.this.type

    Sets the labels parameter

  119. def setLazyAnnotator(value: Boolean): MedicalBertForTokenClassifier.this.type
    Definition Classes
    CanBeLazy
  120. def setMaxSentenceLength(value: Int): MedicalBertForTokenClassifier.this.type

    Sets the maxSentenceLength parameter

  121. def setModelIfNotSet(spark: SparkSession, onnxWrapper: OnnxWrapper): MedicalBertForTokenClassifier.this.type

    Sets the model if it is not set yet

  122. def setModelIfNotSet(spark: SparkSession, tensorflowWrapper: TensorflowWrapper): MedicalBertForTokenClassifier.this.type

    Sets the model if it is not set yet

  123. final def setOutputCol(value: String): MedicalBertForTokenClassifier.this.type
    Definition Classes
    HasOutputAnnotationCol
  124. def setParent(parent: Estimator[MedicalBertForTokenClassifier]): MedicalBertForTokenClassifier
    Definition Classes
    Model
  125. def setSignatures(value: Map[String, String]): MedicalBertForTokenClassifier.this.type

    Sets the signatures parameter

  126. def setVocabulary(value: Map[String, Int]): MedicalBertForTokenClassifier.this.type

    Sets the vocabulary parameter

  127. val signatures: MapFeature[String, String]

    It contains TF model signatures for the laded saved model

  128. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  129. def toString(): String
    Definition Classes
    Identifiable → AnyRef → Any
  130. final def transform(dataset: Dataset[_]): DataFrame
    Definition Classes
    AnnotatorModel → Transformer
  131. def transform(dataset: Dataset[_], paramMap: ParamMap): DataFrame
    Definition Classes
    Transformer
    Annotations
    @Since( "2.0.0" )
  132. def transform(dataset: Dataset[_], firstParamPair: ParamPair[_], otherParamPairs: ParamPair[_]*): DataFrame
    Definition Classes
    Transformer
    Annotations
    @Since( "2.0.0" ) @varargs()
  133. final def transformSchema(schema: StructType): StructType
    Definition Classes
    RawAnnotator → PipelineStage
  134. def transformSchema(schema: StructType, logging: Boolean): StructType
    Attributes
    protected
    Definition Classes
    PipelineStage
    Annotations
    @DeveloperApi()
  135. val uid: String
    Definition Classes
    MedicalBertForTokenClassifier → Identifiable
  136. def validate(schema: StructType): Boolean
    Attributes
    protected
    Definition Classes
    RawAnnotator
  137. val vocabulary: MapFeature[String, Int]

    Vocabulary used to encode the words to ids with WordPieceEncoder

  138. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  139. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  140. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  141. def wrapColumnMetadata(col: Column): Column
    Attributes
    protected
    Definition Classes
    RawAnnotator
  142. def write: MLWriter
    Definition Classes
    ParamsAndFeaturesWritable → DefaultParamsWritable → MLWritable
  143. def writeOnnxModel(path: String, spark: SparkSession, onnxWrapper: OnnxWrapper, suffix: String, fileName: String): Unit
    Definition Classes
    WriteOnnxModel
  144. def writeOnnxModels(path: String, spark: SparkSession, onnxWrappersWithNames: Seq[(OnnxWrapper, String)], suffix: String): Unit
    Definition Classes
    WriteOnnxModel
  145. def writeTensorflowHub(path: String, tfPath: String, spark: SparkSession, suffix: String): Unit
    Definition Classes
    WriteTensorflowModel
  146. def writeTensorflowModel(path: String, spark: SparkSession, tensorflow: TensorflowWrapper, suffix: String, filename: String, configProtoBytes: Option[Array[Byte]]): Unit
    Definition Classes
    WriteTensorflowModel
  147. def writeTensorflowModelV2(path: String, spark: SparkSession, tensorflow: TensorflowWrapper, suffix: String, filename: String, configProtoBytes: Option[Array[Byte]], savedSignatures: Option[Map[String, String]]): Unit
    Definition Classes
    WriteTensorflowModel

Inherited from CheckLicense

Inherited from HasEngine

Inherited from HasCaseSensitiveProperties

Inherited from WriteOnnxModel

Inherited from WriteTensorflowModel

Inherited from HasBatchedAnnotate[MedicalBertForTokenClassifier]

Inherited from AnnotatorModel[MedicalBertForTokenClassifier]

Inherited from CanBeLazy

Inherited from RawAnnotator[MedicalBertForTokenClassifier]

Inherited from HasOutputAnnotationCol

Inherited from HasInputAnnotationCols

Inherited from HasOutputAnnotatorType

Inherited from ParamsAndFeaturesWritable

Inherited from HasFeatures

Inherited from DefaultParamsWritable

Inherited from MLWritable

Inherited from Model[MedicalBertForTokenClassifier]

Inherited from Transformer

Inherited from PipelineStage

Inherited from Logging

Inherited from Params

Inherited from Serializable

Inherited from Serializable

Inherited from Identifiable

Inherited from AnyRef

Inherited from Any

anno

getParam

param

setParam

Ungrouped