Packages

class AssertionDLModel extends AnnotatorModel[AssertionDLModel] with AssertionDLParams with WriteTensorflowModel with HasStorageRef with HasSimpleAnnotate[AssertionDLModel] with ParamsAndFeaturesWritable with HandleExceptionParams with CheckLicense

This is a main class in AssertionDL family. A Deep Learning based approach is used to extract Assertion Status from extracted entities and text. AssertionDLModel requires DOCUMENT, CHUNK and WORD_EMBEDDINGS type annotator inputs, which can be obtained by e.g a DocumentAssembler, NerConverter and WordEmbeddingsModel. The result is an assertion status annotation for each recognized entity. Possible values include “present”, “absent”, “hypothetical”, “conditional”, “associated_with_other_person” etc.

For pretrained models please see the Models Hub for available models.

Example

Define pipeline stages to extract NER chunks first

val data = Seq(
  "Patient with severe fever and sore throat",
  "Patient shows no stomach pain",
  "She was maintained on an epidural and PCA for pain control.").toDF("text")
val documentAssembler = new DocumentAssembler().setInputCol("text").setOutputCol("document")
val sentenceDetector = new SentenceDetector().setInputCols("document").setOutputCol("sentence")
val tokenizer = new Tokenizer().setInputCols("sentence").setOutputCol("token")
val embeddings = WordEmbeddingsModel.pretrained("embeddings_clinical", "en", "clinical/models")
  .setOutputCol("embeddings")
val nerModel = MedicalNerModel.pretrained("ner_clinical", "en", "clinical/models")
  .setInputCols("sentence", "token", "embeddings").setOutputCol("ner")
val nerConverter = new NerConverter().setInputCols("sentence", "token", "ner").setOutputCol("ner_chunk")

Then a pretrained AssertionDLModel is used to extract the assertion status

val clinicalAssertion = AssertionDLModel.pretrained("assertion_dl", "en", "clinical/models")
  .setInputCols("sentence", "ner_chunk", "embeddings")
  .setOutputCol("assertion")

val assertionPipeline = new Pipeline().setStages(Array(
  documentAssembler,
  sentenceDetector,
  tokenizer,
  embeddings,
  nerModel,
  nerConverter,
  clinicalAssertion
))

val assertionModel = assertionPipeline.fit(data)

Show results

val result = assertionModel.transform(data)
result.selectExpr("ner_chunk.result", "assertion.result").show(3, truncate=false)
+--------------------------------+--------------------------------+
|result                          |result                          |
+--------------------------------+--------------------------------+
|[severe fever, sore throat]     |[present, present]              |
|[stomach pain]                  |[absent]                        |
|[an epidural, PCA, pain control]|[present, present, hypothetical]|
+--------------------------------+--------------------------------+
See also

AssertionDLApproach for training a custom AssertionDLModel

AssertionLogRegModel for non deep learning based extraction

Linear Supertypes
CheckLicense, HandleExceptionParams, HasSimpleAnnotate[AssertionDLModel], HasStorageRef, WriteTensorflowModel, AssertionDLParams, AnnotatorModel[AssertionDLModel], CanBeLazy, RawAnnotator[AssertionDLModel], HasOutputAnnotationCol, HasInputAnnotationCols, HasOutputAnnotatorType, ParamsAndFeaturesWritable, HasFeatures, DefaultParamsWritable, MLWritable, Model[AssertionDLModel], Transformer, PipelineStage, Logging, Params, Serializable, Serializable, Identifiable, AnyRef, Any
Ordering
  1. Grouped
  2. Alphabetic
  3. By Inheritance
Inherited
  1. AssertionDLModel
  2. CheckLicense
  3. HandleExceptionParams
  4. HasSimpleAnnotate
  5. HasStorageRef
  6. WriteTensorflowModel
  7. AssertionDLParams
  8. AnnotatorModel
  9. CanBeLazy
  10. RawAnnotator
  11. HasOutputAnnotationCol
  12. HasInputAnnotationCols
  13. HasOutputAnnotatorType
  14. ParamsAndFeaturesWritable
  15. HasFeatures
  16. DefaultParamsWritable
  17. MLWritable
  18. Model
  19. Transformer
  20. PipelineStage
  21. Logging
  22. Params
  23. Serializable
  24. Serializable
  25. Identifiable
  26. AnyRef
  27. Any
  1. Hide All
  2. Show All
Visibility
  1. Public
  2. All

Instance Constructors

  1. new AssertionDLModel()
  2. new AssertionDLModel(uid: String)

    uid

    a unique identifier for the instantiated AnnotatorModel

Type Members

  1. type AnnotationContent = Seq[Row]
    Attributes
    protected
    Definition Classes
    AnnotatorModel
  2. type AnnotatorType = String
    Definition Classes
    HasOutputAnnotatorType

Value Members

  1. final def !=(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  2. final def ##(): Int
    Definition Classes
    AnyRef → Any
  3. final def $[T](param: Param[T]): T
    Attributes
    protected
    Definition Classes
    Params
  4. def $$[T](feature: StructFeature[T]): T
    Attributes
    protected
    Definition Classes
    HasFeatures
  5. def $$[K, V](feature: MapFeature[K, V]): Map[K, V]
    Attributes
    protected
    Definition Classes
    HasFeatures
  6. def $$[T](feature: SetFeature[T]): Set[T]
    Attributes
    protected
    Definition Classes
    HasFeatures
  7. def $$[T](feature: ArrayFeature[T]): Array[T]
    Attributes
    protected
    Definition Classes
    HasFeatures
  8. final def ==(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  9. def _transform(dataset: Dataset[_], recursivePipeline: Option[PipelineModel]): DataFrame
    Attributes
    protected
    Definition Classes
    AnnotatorModel
  10. def afterAnnotate(dataset: DataFrame): DataFrame
    Attributes
    protected
    Definition Classes
    AnnotatorModel
  11. def annotate(annotations: Seq[Annotation]): Seq[Annotation]

    This is main point of interest.

    This is main point of interest. It annotates the input dataset applying properties of the class above This method utilises chunk groups, word piece embeddings and conversion to chunk indexes

    annotations

    a sequence of Annotations

    returns

    a sequence of projected Annotations

    Definition Classes
    AssertionDLModel → HasSimpleAnnotate
  12. final def asInstanceOf[T0]: T0
    Definition Classes
    Any
  13. val batchSize: IntParam

    Size for each batch in the optimization process (Default: 64)

    Size for each batch in the optimization process (Default: 64)

    Definition Classes
    AssertionDLParams
  14. def beforeAnnotate(dataset: Dataset[_]): Dataset[_]

    This method validates the dataset before annotation

    This method validates the dataset before annotation

    dataset

    a collection of inputs to validate

    returns

    a Dataset after validation

    Attributes
    protected
    Definition Classes
    AssertionDLModel → AnnotatorModel
  15. def checkEntityAssertion(entity: String, assertion: String): Boolean
  16. final def checkSchema(schema: StructType, inputAnnotatorType: String): Boolean
    Attributes
    protected
    Definition Classes
    HasInputAnnotationCols
  17. def checkValidEnvironment(spark: Option[SparkSession], scopes: Seq[String]): Unit
    Definition Classes
    CheckLicense
  18. def checkValidScope(scope: String): Unit
    Definition Classes
    CheckLicense
  19. def checkValidScopeAndEnvironment(scope: String, spark: Option[SparkSession], checkLp: Boolean): Unit
    Definition Classes
    CheckLicense
  20. def checkValidScopesAndEnvironment(scopes: Seq[String], spark: Option[SparkSession], checkLp: Boolean): Unit
    Definition Classes
    CheckLicense
  21. val chunkCol: Param[String]

    Column with extracted NER chunks

    Column with extracted NER chunks

    Definition Classes
    AssertionDLParams
  22. val classes: StringArrayParam

    List of internal copies of classes used to train for Python

  23. final def clear(param: Param[_]): AssertionDLModel.this.type
    Definition Classes
    Params
  24. def clone(): AnyRef
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  25. val configProtoBytes: IntArrayParam

    ConfigProto from tensorflow, serialized into byte array.

    ConfigProto from tensorflow, serialized into byte array. Get with config_proto.SerializeToString()

    Definition Classes
    AssertionDLParams
  26. def copy(extra: ParamMap): AssertionDLModel

    requirement for annotators copies

    requirement for annotators copies

    Definition Classes
    AssertionDLModel → RawAnnotator → Model → Transformer → PipelineStage → Params
  27. def copyValues[T <: Params](to: T, extra: ParamMap): T
    Attributes
    protected
    Definition Classes
    Params
  28. def createDatabaseConnection(database: Name): RocksDBConnection
    Definition Classes
    HasStorageRef
  29. val datasetInfo: Param[String]

    Descriptive information about the dataset being used.

    Descriptive information about the dataset being used.

    Definition Classes
    AssertionDLParams
  30. val datasetParams: StructFeature[DatasetEncoderParams]

    Collection of Parameters, which are used by method annotate()

  31. final def defaultCopy[T <: Params](extra: ParamMap): T
    Attributes
    protected
    Definition Classes
    Params
  32. def dfAnnotate: UserDefinedFunction
    Definition Classes
    HasSimpleAnnotate
  33. val doExceptionHandling: BooleanParam

    If true, exceptions are handled.

    If true, exceptions are handled. If exception causing data is passed to the model, a error annotation is emitted which has the exception message. Processing continues with the next one. This comes with a performance penalty.

    Definition Classes
    HandleExceptionParams
  34. val dropout: FloatParam

    Dropout at the output of each layer (Default: 0.05f)

    Dropout at the output of each layer (Default: 0.05f)

    Definition Classes
    AssertionDLParams
  35. val enableOutputLogs: BooleanParam

    Whether to output to annotators log folder (Default: false)

    Whether to output to annotators log folder (Default: false)

    Definition Classes
    AssertionDLParams
  36. val endCol: Param[String]

    Column with token number for last target token

    Column with token number for last target token

    Definition Classes
    AssertionDLParams
  37. var entityAssertionCaseSensitive: BooleanParam

    Determines whether entity labels and assertion labels are case sensitive

  38. val epochs: IntParam

    Number of epochs for the optimization process (Default: 5)

    Number of epochs for the optimization process (Default: 5)

    Definition Classes
    AssertionDLParams
  39. final def eq(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  40. def equals(arg0: Any): Boolean
    Definition Classes
    AnyRef → Any
  41. def explainParam(param: Param[_]): String
    Definition Classes
    Params
  42. def explainParams(): String
    Definition Classes
    Params
  43. def extraValidate(structType: StructType): Boolean
    Attributes
    protected
    Definition Classes
    RawAnnotator
  44. def extraValidateMsg: String
    Attributes
    protected
    Definition Classes
    RawAnnotator
  45. final def extractParamMap(): ParamMap
    Definition Classes
    Params
  46. final def extractParamMap(extra: ParamMap): ParamMap
    Definition Classes
    Params
  47. val features: ArrayBuffer[Feature[_, _, _]]
    Definition Classes
    HasFeatures
  48. def finalize(): Unit
    Attributes
    protected[lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  49. def get[T](feature: StructFeature[T]): Option[T]
    Attributes
    protected
    Definition Classes
    HasFeatures
  50. def get[K, V](feature: MapFeature[K, V]): Option[Map[K, V]]
    Attributes
    protected
    Definition Classes
    HasFeatures
  51. def get[T](feature: SetFeature[T]): Option[Set[T]]
    Attributes
    protected
    Definition Classes
    HasFeatures
  52. def get[T](feature: ArrayFeature[T]): Option[Array[T]]
    Attributes
    protected
    Definition Classes
    HasFeatures
  53. final def get[T](param: Param[T]): Option[T]
    Definition Classes
    Params
  54. final def getClass(): Class[_]
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  55. def getClasses: Array[String]

    get the tags used to trained this NerDLModel

  56. def getConfigProtoBytes: Option[Array[Byte]]

    ConfigProto from tensorflow, serialized into byte array.

    ConfigProto from tensorflow, serialized into byte array. Get with config_proto.SerializeToString()

    Definition Classes
    AssertionDLParams
  57. def getConfigProtoBytesAsInt: Option[Array[Int]]
  58. def getDatasetInfo: String

    get descriptive information about the dataset being used

    get descriptive information about the dataset being used

    Definition Classes
    AssertionDLParams
  59. def getDatasetParams: DatasetEncoderParams
  60. final def getDefault[T](param: Param[T]): Option[T]
    Definition Classes
    Params
  61. def getEnableOutputLogs: Boolean

    Whether to output to annotators log folder

    Whether to output to annotators log folder

    Definition Classes
    AssertionDLParams
  62. def getEntityAssertion: Map[String, Array[String]]

    Get the lists of assertion labels allowed for a given entity

  63. def getEntityAssertionCaseSensitive: Boolean

    Gets the case sensitivity of entities and assertion labels

  64. def getEntityAssertionStr: String

    Get the string representation of the lists of assertion labels allowed for a given entity

  65. def getIncludeConfidence: Boolean

    whether to include confidence scores in annotation metadata

    whether to include confidence scores in annotation metadata

    Definition Classes
    AssertionDLParams
  66. def getInputCols: Array[String]
    Definition Classes
    HasInputAnnotationCols
  67. def getLazyAnnotator: Boolean
    Definition Classes
    CanBeLazy
  68. final def getOrDefault[T](param: Param[T]): T
    Definition Classes
    Params
  69. final def getOutputCol: String
    Definition Classes
    HasOutputAnnotationCol
  70. def getOutputLogsPath: String

    Folder path to save training logs

    Folder path to save training logs

    Definition Classes
    AssertionDLParams
  71. def getParam(paramName: String): Param[Any]
    Definition Classes
    Params
  72. def getReplaceLabels: Map[String, String]

    Gets the assertion labels to be replaced for the specified new labels.

  73. def getReplaceLabelsStr: String

    Gets the string presentation of the assertion labels to be replaced for the specified new labels.

  74. def getScopeWindow: (Int, Int)

    Get scope window

    Get scope window

    Definition Classes
    AssertionDLParams
  75. def getStorageRef: String
    Definition Classes
    HasStorageRef
  76. val graphFile: Param[String]

    File path that contain external graph file.

    File path that contain external graph file. When specified, the provided file will be used, and no graph search will happen. The path can be a local file path, a distributed file path (HDFS, DBFS), or a cloud storage (S3).

    Definition Classes
    AssertionDLParams
  77. val graphFolder: Param[String]

    Folder path that contain external graph files.

    Folder path that contain external graph files.

    Folder path that contain external graph files. The path can a local file path, a distributed file path (HDFS, DBFS), or a cloud storage (S3).

    Definition Classes
    AssertionDLParams
  78. final def hasDefault[T](param: Param[T]): Boolean
    Definition Classes
    Params
  79. def hasParam(paramName: String): Boolean
    Definition Classes
    Params
  80. def hasParent: Boolean
    Definition Classes
    Model
  81. def hashCode(): Int
    Definition Classes
    AnyRef → Any
    Annotations
    @native()
  82. val includeConfidence: BooleanParam

    Whether to include confidence scores in annotation metadata

    Whether to include confidence scores in annotation metadata

    Definition Classes
    AssertionDLParams
  83. def initializeLogIfNecessary(isInterpreter: Boolean, silent: Boolean): Boolean
    Attributes
    protected
    Definition Classes
    Logging
  84. def initializeLogIfNecessary(isInterpreter: Boolean): Unit
    Attributes
    protected
    Definition Classes
    Logging
  85. val inputAnnotatorTypes: Array[String]

    Input annotator types: DOCUMENT, CHUNK, WORD_EMBEDDINGS

    Input annotator types: DOCUMENT, CHUNK, WORD_EMBEDDINGS

    Definition Classes
    AssertionDLModel → HasInputAnnotationCols
  86. final val inputCols: StringArrayParam
    Attributes
    protected
    Definition Classes
    HasInputAnnotationCols
  87. final def isDefined(param: Param[_]): Boolean
    Definition Classes
    Params
  88. final def isInstanceOf[T0]: Boolean
    Definition Classes
    Any
  89. final def isSet(param: Param[_]): Boolean
    Definition Classes
    Params
  90. def isTraceEnabled(): Boolean
    Attributes
    protected
    Definition Classes
    Logging
  91. val labelCol: Param[String]

    Column with one label per document.

    Column with one label per document. Example of possible values: “present”, “absent”, “hypothetical”, “conditional”, “associated_with_other_person”, etc.

    Definition Classes
    AssertionDLParams
  92. val lazyAnnotator: BooleanParam
    Definition Classes
    CanBeLazy
  93. val learningRate: FloatParam

    Learning rate for the optimization process (Default: 0.0012f)

    Learning rate for the optimization process (Default: 0.0012f)

    Definition Classes
    AssertionDLParams
  94. def log: Logger
    Attributes
    protected
    Definition Classes
    Logging
  95. def logDebug(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  96. def logDebug(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  97. def logError(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  98. def logError(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  99. def logInfo(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  100. def logInfo(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  101. def logName: String
    Attributes
    protected
    Definition Classes
    Logging
  102. def logTrace(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  103. def logTrace(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  104. def logWarning(msg: ⇒ String, throwable: Throwable): Unit
    Attributes
    protected
    Definition Classes
    Logging
  105. def logWarning(msg: ⇒ String): Unit
    Attributes
    protected
    Definition Classes
    Logging
  106. val maxSentLen: IntParam

    Max possible length of a sentence, must match graph model (Default: 250)

    Max possible length of a sentence, must match graph model (Default: 250)

    Definition Classes
    AssertionDLParams
  107. def model: TensorflowAssertion

    Tensorflow model for the AssertionDLModel.

    Tensorflow model for the AssertionDLModel. This is used to generate the predictions.

  108. def msgHelper(schema: StructType): String
    Attributes
    protected
    Definition Classes
    HasInputAnnotationCols
  109. final def ne(arg0: AnyRef): Boolean
    Definition Classes
    AnyRef
  110. final def notify(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  111. final def notifyAll(): Unit
    Definition Classes
    AnyRef
    Annotations
    @native()
  112. def onWrite(path: String, spark: SparkSession): Unit
    Definition Classes
    AssertionDLModel → ParamsAndFeaturesWritable
  113. val optionalInputAnnotatorTypes: Array[String]
    Definition Classes
    HasInputAnnotationCols
  114. val outputAnnotatorType: AnnotatorType

    Output annotator types: ASSERTION

    Output annotator types: ASSERTION

    Definition Classes
    AssertionDLModel → HasOutputAnnotatorType
  115. final val outputCol: Param[String]
    Attributes
    protected
    Definition Classes
    HasOutputAnnotationCol
  116. val outputLogsPath: Param[String]

    Folder path to save training logs.

    Folder path to save training logs. If no path is specified, the logs won't be stored in disk. The path can be a local file path, a distributed file path (HDFS, DBFS), or a cloud storage (S3).

    Definition Classes
    AssertionDLParams
  117. lazy val params: Array[Param[_]]
    Definition Classes
    Params
  118. var parent: Estimator[AssertionDLModel]
    Definition Classes
    Model
  119. def save(path: String): Unit
    Definition Classes
    MLWritable
    Annotations
    @Since( "1.6.0" ) @throws( ... )
  120. val scopeWindow: IntArrayParam

    The scope window of the assertion (whole sentence by default)

    The scope window of the assertion (whole sentence by default)

    Definition Classes
    AssertionDLParams
  121. def set[T](feature: StructFeature[T], value: T): AssertionDLModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  122. def set[K, V](feature: MapFeature[K, V], value: Map[K, V]): AssertionDLModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  123. def set[T](feature: SetFeature[T], value: Set[T]): AssertionDLModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  124. def set[T](feature: ArrayFeature[T], value: Array[T]): AssertionDLModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  125. final def set(paramPair: ParamPair[_]): AssertionDLModel.this.type
    Attributes
    protected
    Definition Classes
    Params
  126. final def set(param: String, value: Any): AssertionDLModel.this.type
    Attributes
    protected
    Definition Classes
    Params
  127. final def set[T](param: Param[T], value: T): AssertionDLModel.this.type
    Definition Classes
    Params
  128. def setBatchSize(size: Int): AssertionDLModel.this.type

    Size for each batch in the optimization process

    Size for each batch in the optimization process

    Definition Classes
    AssertionDLParams
  129. def setChunkCol(c: String): AssertionDLModel.this.type

    Column with extracted NER chunks

    Column with extracted NER chunks

    Definition Classes
    AssertionDLParams
  130. def setConfigProtoBytes(bytes: Array[Int]): AssertionDLModel.this.type

    ConfigProto from tensorflow, serialized into byte array.

    ConfigProto from tensorflow, serialized into byte array. Get with config_proto.SerializeToString()

    Definition Classes
    AssertionDLParams
  131. def setDatasetInfo(value: String): AssertionDLModel.this.type

    set descriptive information about the dataset being used

    set descriptive information about the dataset being used

    Definition Classes
    AssertionDLParams
  132. def setDatasetParams(params: DatasetEncoderParams): AssertionDLModel

    Collection of Parameters, which are used by method annotate()

  133. def setDefault[T](feature: StructFeature[T], value: () ⇒ T): AssertionDLModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  134. def setDefault[K, V](feature: MapFeature[K, V], value: () ⇒ Map[K, V]): AssertionDLModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  135. def setDefault[T](feature: SetFeature[T], value: () ⇒ Set[T]): AssertionDLModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  136. def setDefault[T](feature: ArrayFeature[T], value: () ⇒ Array[T]): AssertionDLModel.this.type
    Attributes
    protected
    Definition Classes
    HasFeatures
  137. final def setDefault(paramPairs: ParamPair[_]*): AssertionDLModel.this.type
    Attributes
    protected
    Definition Classes
    Params
  138. final def setDefault[T](param: Param[T], value: T): AssertionDLModel.this.type
    Attributes
    protected[org.apache.spark.ml]
    Definition Classes
    Params
  139. def setDoExceptionHandling(value: Boolean): AssertionDLModel.this.type

    If true, exceptions are handled.

    If true, exceptions are handled. If exception causing data is passed to the model, a error annotation is emitted which has the exception message. Processing continues with the next one. This comes with a performance penalty.

    Definition Classes
    HandleExceptionParams
  140. def setDropout(factor: Float): AssertionDLModel.this.type

    Dropout at the output of each layer

    Dropout at the output of each layer

    Definition Classes
    AssertionDLParams
  141. def setEnableOutputLogs(v: Boolean): AssertionDLModel.this.type

    Whether to output to annotators log folder

    Whether to output to annotators log folder

    Definition Classes
    AssertionDLParams
  142. def setEndCol(e: String): AssertionDLModel.this.type

    Column with token number for last target token

    Column with token number for last target token

    Definition Classes
    AssertionDLParams
  143. def setEntityAssertion(assertionEntities: HashMap[String, List[String]]): AssertionDLModel.this.type

    Set the lists of assertion labels allowed for a given entity.

    Set the lists of assertion labels allowed for a given entity.

    Note

    entityAssertion functionality is processed earlier than replaceLabels

  144. def setEntityAssertion(assertionEntities: Map[String, Array[String]]): AssertionDLModel.this.type

    Set the lists of assertion labels allowed for a given entity.

    Set the lists of assertion labels allowed for a given entity.

    Note

    entityAssertion functionality is processed earlier than replaceLabels

  145. def setEntityAssertionCaseSensitive(value: Boolean): AssertionDLModel

    Sets the case sensitivity of entities and assertion labels

  146. def setEpochs(number: Int): AssertionDLModel.this.type

    Number of epochs for the optimization process

    Number of epochs for the optimization process

    Definition Classes
    AssertionDLParams
  147. def setGraphFile(path: String): AssertionDLModel.this.type

    Folder path that contain external graph files

    Folder path that contain external graph files

    Definition Classes
    AssertionDLParams
  148. def setGraphFolder(path: String): AssertionDLModel.this.type

    Folder path that contain external graph files

    Folder path that contain external graph files

    Definition Classes
    AssertionDLParams
  149. def setIncludeConfidence(value: Boolean): AssertionDLModel.this.type

    Whether to include confidence scores in annotation metadata

    Whether to include confidence scores in annotation metadata

    Definition Classes
    AssertionDLParams
  150. final def setInputCols(value: String*): AssertionDLModel.this.type
    Definition Classes
    HasInputAnnotationCols
  151. def setInputCols(value: Array[String]): AssertionDLModel.this.type
    Definition Classes
    HasInputAnnotationCols
  152. def setLabelCol(label: String): AssertionDLModel.this.type

    Column with one label per document

    Column with one label per document

    Definition Classes
    AssertionDLParams
  153. def setLazyAnnotator(value: Boolean): AssertionDLModel.this.type
    Definition Classes
    CanBeLazy
  154. def setLearningRate(rate: Float): AssertionDLModel.this.type

    Learning rate for the optimization process

    Learning rate for the optimization process

    Definition Classes
    AssertionDLParams
  155. def setMaxSentLen(len: Int): AssertionDLModel.this.type

    Max possible length of a sentence, must match graph model

    Max possible length of a sentence, must match graph model

    Definition Classes
    AssertionDLParams
  156. final def setOutputCol(value: String): AssertionDLModel.this.type
    Definition Classes
    HasOutputAnnotationCol
  157. def setOutputLogsPath(v: String): AssertionDLModel.this.type

    Folder path to save training logs

    Folder path to save training logs

    Definition Classes
    AssertionDLParams
  158. def setParent(parent: Estimator[AssertionDLModel]): AssertionDLModel
    Definition Classes
    Model
  159. def setReplaceLabels(value: Map[String, String]): AssertionDLModel.this.type

    Sets the replaceLabels to be replaced for the specified new labels.

    Sets the replaceLabels to be replaced for the specified new labels.

    value

    A map containing the replacement labels.

    Note

    replaceLabels functionality runs later than entityAssertion

  160. def setReplaceLabels(value: HashMap[String, String]): AssertionDLModel.this.type

    Sets the replaceLabels to be replaced for the specified new labels.

    Sets the replaceLabels to be replaced for the specified new labels.

    value

    A map containing the replacement labels.

    Note

    replaceLabels functionality is processed later than entityAssertion

  161. def setScopeWindow(window: (Int, Int)): AssertionDLModel.this.type

    Max possible length of a sentence.

    Max possible length of a sentence.

    Definition Classes
    AssertionDLParams
  162. def setStartCol(s: String): AssertionDLModel.this.type

    Column with token number for first target token

    Column with token number for first target token

    Definition Classes
    AssertionDLParams
  163. def setStorageRef(value: String): AssertionDLModel.this.type
    Definition Classes
    HasStorageRef
  164. def setTensorflow(spark: SparkSession, tf: TensorflowWrapper): AssertionDLModel
  165. def setValidationSplit(validationSplit: Float): AssertionDLModel.this.type

    Choose the proportion of training dataset to be validated against the model on each Epoch.

    Choose the proportion of training dataset to be validated against the model on each Epoch. The value should be between 0.0 and 1.0 and by default it is 0.0 and off.

    Definition Classes
    AssertionDLParams
  166. def setVerbose(verbose: Level): AssertionDLModel.this.type

    Level of verbosity during training

    Level of verbosity during training

    Definition Classes
    AssertionDLParams
  167. val startCol: Param[String]

    Column with token number for first target token

    Column with token number for first target token

    Definition Classes
    AssertionDLParams
  168. val storageRef: Param[String]
    Definition Classes
    HasStorageRef
  169. final def synchronized[T0](arg0: ⇒ T0): T0
    Definition Classes
    AnyRef
  170. def toString(): String
    Definition Classes
    Identifiable → AnyRef → Any
  171. final def transform(dataset: Dataset[_]): DataFrame
    Definition Classes
    AnnotatorModel → Transformer
  172. def transform(dataset: Dataset[_], paramMap: ParamMap): DataFrame
    Definition Classes
    Transformer
    Annotations
    @Since( "2.0.0" )
  173. def transform(dataset: Dataset[_], firstParamPair: ParamPair[_], otherParamPairs: ParamPair[_]*): DataFrame
    Definition Classes
    Transformer
    Annotations
    @Since( "2.0.0" ) @varargs()
  174. final def transformSchema(schema: StructType): StructType
    Definition Classes
    RawAnnotator → PipelineStage
  175. def transformSchema(schema: StructType, logging: Boolean): StructType
    Attributes
    protected
    Definition Classes
    PipelineStage
    Annotations
    @DeveloperApi()
  176. val uid: String
    Definition Classes
    AssertionDLModel → Identifiable
  177. def validate(schema: StructType): Boolean
    Attributes
    protected
    Definition Classes
    RawAnnotator
  178. def validateStorageRef(dataset: Dataset[_], inputCols: Array[String], annotatorType: String): Unit
    Definition Classes
    HasStorageRef
  179. val validationSplit: FloatParam

    The proportion of training dataset to be used as validation set.

    The proportion of training dataset to be used as validation set.

    The model will be validated against this dataset on each Epoch and will not be used for training. The value should be between 0.0 and 1.0.

    Definition Classes
    AssertionDLParams
  180. val verbose: IntParam

    Level of verbosity during training

    Level of verbosity during training

    Definition Classes
    AssertionDLParams
  181. final def wait(): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  182. final def wait(arg0: Long, arg1: Int): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  183. final def wait(arg0: Long): Unit
    Definition Classes
    AnyRef
    Annotations
    @throws( ... ) @native()
  184. def wrapColumnMetadata(col: Column): Column
    Attributes
    protected
    Definition Classes
    RawAnnotator
  185. def write: MLWriter
    Definition Classes
    ParamsAndFeaturesWritable → DefaultParamsWritable → MLWritable
  186. def writeTensorflowHub(path: String, tfPath: String, spark: SparkSession, suffix: String): Unit
    Definition Classes
    WriteTensorflowModel
  187. def writeTensorflowModel(path: String, spark: SparkSession, tensorflow: TensorflowWrapper, suffix: String, filename: String, configProtoBytes: Option[Array[Byte]]): Unit
    Definition Classes
    WriteTensorflowModel
  188. def writeTensorflowModelV2(path: String, spark: SparkSession, tensorflow: TensorflowWrapper, suffix: String, filename: String, configProtoBytes: Option[Array[Byte]], savedSignatures: Option[Map[String, String]]): Unit
    Definition Classes
    WriteTensorflowModel

Inherited from CheckLicense

Inherited from HandleExceptionParams

Inherited from HasSimpleAnnotate[AssertionDLModel]

Inherited from HasStorageRef

Inherited from WriteTensorflowModel

Inherited from AssertionDLParams

Inherited from AnnotatorModel[AssertionDLModel]

Inherited from CanBeLazy

Inherited from RawAnnotator[AssertionDLModel]

Inherited from HasOutputAnnotationCol

Inherited from HasInputAnnotationCols

Inherited from HasOutputAnnotatorType

Inherited from ParamsAndFeaturesWritable

Inherited from HasFeatures

Inherited from DefaultParamsWritable

Inherited from MLWritable

Inherited from Model[AssertionDLModel]

Inherited from Transformer

Inherited from PipelineStage

Inherited from Logging

Inherited from Params

Inherited from Serializable

Inherited from Serializable

Inherited from Identifiable

Inherited from AnyRef

Inherited from Any

Parameters

Annotator types

Required input and expected output annotator types

Members

Parameter setters

Parameter getters