Classification of Self Reported Vaccine Status (BioBERT) ONNX

Description

Classification of tweets indicating self-reported COVID-19 vaccination status. This model involves the identification of self-reported COVID-19 vaccination status in English tweets.

Predicted Entities

Vaccine_chatter, Self_reports

Copy S3 URI

How to use

document_assembler = DocumentAssembler() \
    .setInputCol("text") \
    .setOutputCol("document")

tokenizer = Tokenizer() \
    .setInputCols(["document"]) \
    .setOutputCol("token")

sequence_classifier = MedicalBertForSequenceClassification.pretrained("bert_sequence_classifier_self_reported_vaccine_status_tweet_onnx", "en", "clinical/models")\
  .setInputCols(["document", "token"])\
  .setOutputCol("class")

pipeline = Pipeline(stages=[
    document_assembler, 
    tokenizer,
    sequence_classifier    
])

data = spark.createDataFrame(["I came to a point finally and i've vaccinated, didnt feel pain.Suggest everyone",
                              "If Pfizer believes we need a booster shot, we need it. Who knows their product better? Following the guidance of @CDCgov is how I wound up w/ Covid-19 and having to shut down my K-2 classroom for an entire week. I will do whatever it takes to protect my students, friends, family."], StringType()).toDF("text")

model = pipeline.fit(data)
result = model.transform(data)
document_assembler = nlp.DocumentAssembler() \
    .setInputCol("text") \
    .setOutputCol("document")

tokenizer = nlp.Tokenizer() \
    .setInputCols(["document"]) \
    .setOutputCol("token")

sequenceClassifier = medical.BertForSequenceClassification.pretrained("bert_sequence_classifier_self_reported_vaccine_status_tweet_onnx", "en", "clinical/models")\
    .setInputCols(["document","token"])\
    .setOutputCol("classes")

pipeline = nlp.Pipeline(stages=[
    document_assembler,
    tokenizer,
    sequenceClassifier
])
example = spark.createDataFrame(["I came to a point finally and i've vaccinated, didnt feel pain.Suggest everyone",
                              "If Pfizer believes we need a booster shot, we need it. Who knows their product better? Following the guidance of @CDCgov is how I wound up w/ Covid-19 and having to shut down my K-2 classroom for an entire week. I will do whatever it takes to protect my students, friends, family."], StringType()).toDF("text")

model = pipeline.fit(data)
result = model.transform(data)

val document_assembler = new DocumentAssembler() 
    .setInputCol("text") 
    .setOutputCol("document")

val tokenizer = new Tokenizer() 
    .setInputCols(Array("document")) 
    .setOutputCol("token")

val sequenceClassifier = MedicalBertForSequenceClassification.pretrained("bert_sequence_classifier_self_reported_vaccine_status_tweet_onnx", "en", "clinical/models")
  .setInputCols(Array("document","token"))
  .setOutputCol("class")

val pipeline = new Pipeline().setStages(Array(document_assembler, tokenizer, sequenceClassifier))

val example = Seq(Array("I came to a point finally and i've vaccinated, didnt feel pain.Suggest everyone",
                        "If Pfizer believes we need a booster shot, we need it. Who knows their product better? Following the guidance of @CDCgov is how I wound up w/ Covid-19 and having to shut down my K-2 classroom for an entire week. I will do whatever it takes to protect my students, friends, family.")).toDF("text")

val model = pipeline.fit(data)
val result = model.transform(data)

Results


+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+-----------------+
|text                                                                                                                                                                                                                                                                                    |result           |
+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+-----------------+
|I came to a point finally and i've vaccinated, didnt feel pain. Suggest everyone                                                                                                                                                                                                        |[Self_reports]   |
|If Pfizer believes we need a booster shot, we need it. Who knows their product better? Following the guidance of @CDCgov is how I wound up w/ Covid-19 and having to shut down my K-2 classroom for an entire week. I will do whatever it takes to protect my students, friends, family.|[Vaccine_chatter]|
+----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+-----------------+

Model Information

Model Name: bert_sequence_classifier_self_reported_vaccine_status_tweet_onnx
Compatibility: Healthcare NLP 6.1.1+
License: Licensed
Edition: Official
Input Labels: [document, token]
Output Labels: [label]
Language: en
Size: 437.7 MB
Case sensitive: true