License Number Contextual Parser Model

Description

This model, extracts license number entities from clinical texts.

How to use

document_assembler = DocumentAssembler() \
    .setInputCol("text") \
    .setOutputCol("document")

sentence_detector = SentenceDetectorDLModel.pretrained("sentence_detector_dl_healthcare","en","clinical/models")\
    .setInputCols(["document"])\
    .setOutputCol("sentence")

tokenizer = Tokenizer() \
    .setInputCols(["sentence"]) \
    .setOutputCol("token")

license_contextual_parser = ContextualParserModel.pretrained("license_parser","en","clinical/models") \
    .setInputCols(["sentence", "token"]) \
    .setOutputCol("chunk_license")

chunk_converter = ChunkConverter() \
    .setInputCols(["chunk_license"]) \
    .setOutputCol("ner_chunk")

parserPipeline = Pipeline(stages=[
        document_assembler,
        sentence_detector,
        tokenizer,
        license_contextual_parser,
        chunk_converter
        ])

model = parserPipeline.fit(spark.createDataFrame([[""]]).toDF("text"))

sample_text = """Name : Hendrickson, Ora, Record date: 2093-01-13, # 719435.
Dr. John Green, ID: 1231511863, IP 203.120.223.13.
He is a 60-year-old male was admitted to the Day Hospital for cystectomy on 01/13/93.
Patient's VIN : 1HGBH41JXMN109286, VIN 4Y1SL65848Z411439, VIN 1HGCM82633A123456 - VIN JH4KA7560MC012345 - VIN 5YJSA1E14HF123456
SSN #333-44-6666, Driver's license no: A334455B, plate 34NLP34. Lic: 12345As. Cert: 12345As
Phone (302) 786-5227, 0295 Keats Street, San Francisco, E-MAIL: smith@gmail.com."""

result = model.transform(spark.createDataFrame([[sample_text]]).toDF("text"))

val document_assembler = new DocumentAssembler()
    .setInputCol("text")
    .setOutputCol("document")

val sentence_detector = SentenceDetectorDLModel.pretrained("sentence_detector_dl_healthcare","en","clinical/models")
    .setInputCols("document")
    .setOutputCol("sentence")

val tokenizer = new Tokenizer()
    .setInputCols("sentence")
    .setOutputCol("token")

val license_contextual_parser = ContextualParserModel.pretrained("license_parser","en","clinical/models")
    .setInputCols(Array("sentence", "token"))
    .setOutputCol("chunk_license")

val chunk_converter = new ChunkConverter()
    .setInputCols("chunk_license")
    .setOutputCol("ner_chunk")

val parserPipeline = new Pipeline().setStages(Array(
        document_assembler,
        sentence_detector,
        tokenizer,
        license_contextual_parser,
        chunk_converter
))


val sample_text = """Name : Hendrickson, Ora, Record date: 2093-01-13, # 719435.
Dr. John Green, ID: 1231511863, IP 203.120.223.13.
He is a 60-year-old male was admitted to the Day Hospital for cystectomy on 01/13/93.
Patient's VIN : 1HGBH41JXMN109286, VIN 4Y1SL65848Z411439, VIN 1HGCM82633A123456 - VIN JH4KA7560MC012345 - VIN 5YJSA1E14HF123456
SSN #333-44-6666, Driver's license no: A334455B, plate 34NLP34. Lic: 12345As. Cert: 12345As
Phone (302) 786-5227, 0295 Keats Street, San Francisco, E-MAIL: smith@gmail.com."""

val data = Seq(sample_text).toDF("text")

val results = parserPipeline.fit(data).transform(data)

Results

+------------+-----+---+-------+
|       chunk|begin|end|  label|
+------------+-----+---+-------+
|#333-44-6666|  329|340|LICENSE|
|    A334455B|  364|371|LICENSE|
|     12345As|  394|400|LICENSE|
|     12345As|  409|415|LICENSE|
+------------+-----+---+-------+

Model Information

Model Name:	license_parser
Compatibility:	Healthcare NLP 5.5.0+
License:	Licensed
Edition:	Official
Input Labels:	[sentence, token]
Output Labels:	[entity_license]
Language:	en
Size:	9.3 KB
Case sensitive:	false

PREVIOUSDriver License Number Contextual Parser Model

NEXTMedical Record Contextual Parser Model