Description
This pretrained pipeline is built on the top of ner_ade_biobert model.
Predicted Entities
DRUG, ADE
Live Demo Open in Colab Copy S3 URI
How to use
pipeline = PretrainedPipeline("ner_ade_biobert_pipeline", "en", "clinical/models")
pipeline.annotate("Both the erbA IRES and the erbA/myb virus constructs transformed erythroid cells after infection of bone marrow or blastoderm cultures. The erbA/myb IRES virus exhibited a 5-10-fold higher transformed colony forming efficiency than the erbA IRES virus in the blastoderm assay.")
val pipeline = new PretrainedPipeline("ner_ade_biobert_pipeline", "en", "clinical/models")
pipeline.annotate("Both the erbA IRES and the erbA/myb virus constructs transformed erythroid cells after infection of bone marrow or blastoderm cultures. The erbA/myb IRES virus exhibited a 5-10-fold higher transformed colony forming efficiency than the erbA IRES virus in the blastoderm assay.")
import nlu
nlu.load("en.med_ner.biobert_ade.pipeline").predict("""Both the erbA IRES and the erbA/myb virus constructs transformed erythroid cells after infection of bone marrow or blastoderm cultures. The erbA/myb IRES virus exhibited a 5-10-fold higher transformed colony forming efficiency than the erbA IRES virus in the blastoderm assay.""")
Results
+--------------------------------------------+--------+
|chunks |entities|
+--------------------------------------------+--------+
|5-10-fold |DRUG |
|higher transformed colony forming efficiency|ADE |
+--------------------------------------------+--------+
Model Information
| Model Name: | ner_ade_biobert_pipeline |
| Type: | pipeline |
| Compatibility: | Healthcare NLP 3.4.1+ |
| License: | Licensed |
| Edition: | Official |
| Language: | en |
| Size: | 421.8 MB |
Included Models
- DocumentAssembler
- SentenceDetectorDLModel
- TokenizerModel
- BertEmbeddings
- MedicalNerModel
- NerConverter