Split Sentences in Healthcare Texts

Description

SentenceDetectorDL (SDDL) is based on a general-purpose neural network model for sentence boundary detection. The task of sentence boundary detection is to identify sentences within a text. Many natural language processing tasks take a sentence as an input unit, such as part-of-speech tagging, dependency parsing, named entity recognition or machine translation.

In this model, we treated the sentence boundary detection task as a classification problem based on a paper {Deep-EOS: General-Purpose Neural Networks for Sentence Boundary Detection (2020, Stefan Schweter, Sajawel Ahmed) using CNN architecture. We also modified the original implemenation a little bit to cover broken sentences and some impossible end of line chars.

How to use

documenter = DocumentAssembler()\
.setInputCol("text")\
.setOutputCol("document")

sentencerDL = SentenceDetectorDLModel\
.load("./abc") \
.setInputCols(["document"]) \
.setOutputCol("sentences")

sd_model = LightPipeline(PipelineModel(stages=[documenter, sentencerDL]))

result = sd_model.fullAnnotate("""He was given boluses of MS04 with some effect, he has since been placed on a PCA - he take 80mg of oxycontin at home, his PCA dose is ~ 2 the morphine dose of the oxycontin, he has also received ativan for anxiety.Repleted with 20 meq kcl po, 30 mmol K-phos iv and 2 gms mag so4 iv. LASIX CHANGED TO 40 PO BID WHICH IS SAME AS HE TAKES AT HOME - RECEIVED 40 PO IN AM - 700CC U/O TOTAL FOR FLUID NEGATIVE ~ 600 THUS FAR TODAY, ~ 600 NEG LOS.""")


val documenter = DocumentAssembler()
.setInputCol("text")
.setOutputCol("document")
val model = SentenceDetectorDLModel.pretrained("sentence_detector_dl_healthcare","en","clinical/models")
.setInputCols(Array("document"))
.setOutputCol("sentence")

val pipeline = new Pipeline().setStages(Array(documenter, model))
val result = pipeline.fit(Seq.empty["He was given boluses of MS04 with some effect, he has since been placed on a PCA - he take 80mg of oxycontin at home, his PCA dose is ~ 2 the morphine dose of the oxycontin, he has also received ativan for anxiety.Repleted with 20 meq kcl po, 30 mmol K-phos iv and 2 gms mag so4 iv. LASIX CHANGED TO 40 PO BID WHICH IS SAME AS HE TAKES AT HOME - RECEIVED 40 PO IN AM - 700CC U/O TOTAL FOR FLUID NEGATIVE ~ 600 THUS FAR TODAY, ~ 600 NEG LOS."].toDS.toDF("text")).transform(data)


Results

|    | sentence                                                                                                                                                                                                               |
|---:|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
|  0 | He was given boluses of MS04 with some effect, he has since been placed on a PCA - he take 80mg of oxycontin at home, his PCA dose is ~ 2 the morphine dose of the oxycontin, he has also received ativan for anxiety. |
|  1 | Repleted with 20 meq kcl po, 30 mmol K-phos iv and 2 gms mag so4 iv.                                                                                                                                                   |
|  2 | LASIX CHANGED TO 40 PO BID WHICH IS SAME AS HE TAKES AT HOME - RECEIVED 40 PO IN AM - 700CC U/O TOTAL FOR FLUID NEGATIVE ~ 600 THUS FAR TODAY, ~ 600 NEG LOS.                                                          |



Model Information

 Model Name: sentence_detector_dl_healthcare Compatibility: Spark NLP for Healthcare 2.7.0+ License: Licensed Edition: Official Input Labels: [document] Output Labels: [sentences] Language: en

Data Source

Healthcare SDDL model is trained on in-house domain specific data.

Benchmarking

|    | Accuracy | Recall   | Prec     | F1   |
|---:|---------:|---------:|---------:|-----:|
|  0 | 0.98     | 1.00     | 0.96     | 0.98 |