sparkocr.utils.svs.phi_cleaning#

Classes#

Functions#

Attributes#

class CopyOp(start=[])#

Bases: object

lock#

original = []#

value = []#

read()#

update(index, val)#

add_description(f)#

check_free_space(directory)#

copy_and_strip(file, copyop, index, tags, verbose)#

copy_and_strip_all(files, copyop, tags, verbose)#

delete_associated_image(slide_path, image_type, log)#

delete_associated_metadata(slide_path, tags, log)#

detect_format(filename)#

do_strip_in_place(file)#

file_progress(b)#

generate_unique_id()#

get_config_path(dlgtype='native', path='')#

get_csv_message()#

get_dir(dlgtype='native', path='')#

get_dir_(dlgtype='native', path='path')#

get_filename(f)#

get_files(dlgtype='native', path='')#

get_files_(dlgtype='native', path='')#

get_files_structure(input: str, output: str, rename: bool)#

get_inplace_dir(dlgtype='native', path='')#

get_inplace_files(dlgtype='native', path='')#

get_inplace_info(fs)#

inplace_info(f)#

parse_csv(file, filelist, invalid)#

parse_files(files)#

parse_inplace_files(files)#

remove_phi(input, output, tags=predefined_tags, append_tags=[], rename=False, verbose=False)#

Remove label images, macro images, and specified metadata from SVS files.

This function processes SVS files to remove sensitive metadata and associated images. By default, it removes specific metadata tags: “ImageDescription.Filename”, “ImageDescription.Date”, “ImageDescription.Time”, and “ImageDescription.User”.

Parameters: - input (str): The file path or directory containing the SVS files to be de-identified. - output (str): The file path or directory where the de-identified files will be saved. - tags (list, optional): A list of metadata tags to remove, replacing the default tags if provided. - append_tags (list, optional): Additional tags to remove, added to the defaults without overriding them. - rename (bool, optional): whether to rename the output svs file. Default is False. - verbose (bool, optional): whether to plot detailed logs or not. Default is False.

Returns: - None

remove_tag_section(input_string, tag)#

resource_path(relative_path)#

Get absolute path to resource, works for dev and for PyInstaller

test_file_dialog(dlgtype, path='')#

track_copy_progress(copyop)#

predefined_tags = ['ImageDescription.Filename', 'ImageDescription.Date', 'ImageDescription.Time', 'ImageDescription.User']#