Description
This pipeline, extracts date-of-birth (DOB) entities in clinical texts.
How to use
from sparknlp.pretrained import PretrainedPipeline
pipeline = PretrainedPipeline("date_of_birth_parser_pipeline", "en", "clinical/models")
sample_text = """
Record date : 2081-01-04
DB : 11.04.1962
DT : 12-03-1978
DOD : 10.25.23
SOCIAL HISTORY:
She was born on Nov 04, 1962 in London and got married on 04/05/1979. When she got pregnant on 15 May 1079, the doctor wanted to verify her DOB was November 4, 1962. Her date of birth was confirmed to be 11-04-1962, the patient is 45 years old on 25 Sep 2007.
PROCEDURES:
Patient was evaluated on 1988-03-15 for allergies. She was seen by the endocrinology service and she was discharged on 9/23/1988.
MEDICATIONS
1. Coumadin 1 mg daily. Last INR was on August 14, 2007, and her INR was 2.3."""
result = pipeline.transform(spark.createDataFrame([[sample_text]]).toDF("text"))
from johnsnowlabs import nlp, medical
pipeline = nlp.PretrainedPipeline("date_of_birth_parser_pipeline", "en", "clinical/models")
sample_text = """
Record date : 2081-01-04
DB : 11.04.1962
DT : 12-03-1978
DOD : 10.25.23
SOCIAL HISTORY:
She was born on Nov 04, 1962 in London and got married on 04/05/1979. When she got pregnant on 15 May 1079, the doctor wanted to verify her DOB was November 4, 1962. Her date of birth was confirmed to be 11-04-1962, the patient is 45 years old on 25 Sep 2007.
PROCEDURES:
Patient was evaluated on 1988-03-15 for allergies. She was seen by the endocrinology service and she was discharged on 9/23/1988.
MEDICATIONS
1. Coumadin 1 mg daily. Last INR was on August 14, 2007, and her INR was 2.3."""
result = pipeline.transform(spark.createDataFrame([[sample_text]]).toDF("text"))
import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline
val pipeline = PretrainedPipeline("date_of_birth_parser_pipeline", "en", "clinical/models")
val sample_text = """
Record date : 2081-01-04
DB : 11.04.1962
DT : 12-03-1978
DOD : 10.25.23
SOCIAL HISTORY:
She was born on Nov 04, 1962 in London and got married on 04/05/1979. When she got pregnant on 15 May 1079, the doctor wanted to verify her DOB was November 4, 1962. Her date of birth was confirmed to be 11-04-1962, the patient is 45 years old on 25 Sep 2007.
PROCEDURES:
Patient was evaluated on 1988-03-15 for allergies. She was seen by the endocrinology service and she was discharged on 9/23/1988.
MEDICATIONS
1. Coumadin 1 mg daily. Last INR was on August 14, 2007, and her INR was 2.3."""
val result = pipeline.transform(spark.createDataFrame([[sample_text]]).toDF("text"))
Results
| chunk | begin | end | label |
| :--------------- | ----: | --: | :---- |
| 11.04.1962 | 32 | 41 | DOB |
| Nov 04, 1962 | 109 | 120 | DOB |
| November 4, 1962 | 241 | 256 | DOB |
| 11-04-1962 | 297 | 306 | DOB |
Model Information
| Model Name: | date_of_birth_parser_pipeline |
| Type: | pipeline |
| Compatibility: | Healthcare NLP 6.3.0+ |
| License: | Licensed |
| Edition: | Official |
| Language: | en |
| Size: | 397.1 KB |
Included Models
- DocumentAssembler
- SentenceDetectorDLModel
- TokenizerModel
- ContextualParserModel
- ChunkConverter