Description
This model, extracts account number entities from clinical texts.
How to use
document_assembler = DocumentAssembler()\
.setInputCol("text")\
.setOutputCol("document")
sentence_detector = SentenceDetectorDLModel.pretrained("sentence_detector_dl_healthcare","en","clinical/models")\
.setInputCols(["document"])\
.setOutputCol("sentence")
tokenizer = Tokenizer()\
.setInputCols(["sentence"])\
.setOutputCol("token")
account_contextual_parser = ContextualParserModel.pretrained("account_parser","en","clinical/models")\
.setInputCols(["sentence", "token"])\
.setOutputCol("chunk_account")
chunk_converter = ChunkConverter()\
.setInputCols(["chunk_account"])\
.setOutputCol("ner_chunk")
parserPipeline = Pipeline(stages=[
document_assembler,
sentence_detector,
tokenizer,
account_contextual_parser,
chunk_converter
])
model = parserPipeline.fit(spark.createDataFrame([[""]]).toDF("text"))
sample_text = """Name : Hendrickson, Ora, Record date: 2093-01-13, # 719435.
Dr. John Green, ID: 1231511863, IP 203.120.223.13. account: 1234567890120 route number: 123567
He is a 60-year-old male was admitted to the Day Hospital for cystectomy on 01/13/93.
Patient's VIN : 1HGBH41JXMN109286, SSN #333-44-6666, Driver's license no:A334455B.
Phone (302) 786-5227, 0295 Keats Street, San Francisco, E-MAIL: smith@gmail.com.
Additional account: 9876543210987 for billing purposes.
Secondary account number: 4567890123456 linked to insurance.
Backup account: 7890123456789 for emergency payments."""
result = model.transform(spark.createDataFrame([[sample_text]]).toDF("text"))
document_assembler = nlp.DocumentAssembler()\
.setInputCol("text")\
.setOutputCol("document")
sentence_detector = nlp.SentenceDetectorDLModel.pretrained("sentence_detector_dl_healthcare","en","clinical/models")\
.setInputCols(["document"])\
.setOutputCol("sentence")
tokenizer = nlp.Tokenizer()\
.setInputCols(["sentence"])\
.setOutputCol("token")
account_contextual_parser = medical.ContextualParserModel.pretrained("account_parser","en","clinical/models")\
.setInputCols(["sentence", "token"])\
.setOutputCol("chunk_account")
chunk_converter = medical.ChunkConverter()\
.setInputCols(["chunk_account"])\
.setOutputCol("ner_chunk")
parserPipeline = nlp.Pipeline(stages=[
document_assembler,
sentence_detector,
tokenizer,
account_contextual_parser,
chunk_converter
])
model = parserPipeline.fit(spark.createDataFrame([[""]]).toDF("text"))
sample_text = """Name : Hendrickson, Ora, Record date: 2093-01-13, # 719435.
Dr. John Green, ID: 1231511863, IP 203.120.223.13. account: 1234567890120 route number: 123567
He is a 60-year-old male was admitted to the Day Hospital for cystectomy on 01/13/93.
Patient's VIN : 1HGBH41JXMN109286, SSN #333-44-6666, Driver's license no:A334455B.
Phone (302) 786-5227, 0295 Keats Street, San Francisco, E-MAIL: smith@gmail.com.
Additional account: 9876543210987 for billing purposes.
Secondary account number: 4567890123456 linked to insurance.
Backup account: 7890123456789 for emergency payments."""
result = model.transform(spark.createDataFrame([[sample_text]]).toDF("text"))
val document_assembler = new DocumentAssembler()
.setInputCol("text")
.setOutputCol("document")
val sentence_detector = SentenceDetectorDLModel.pretrained("sentence_detector_dl_healthcare","en","clinical/models")
.setInputCols("document")
.setOutputCol("sentence")
val tokenizer = new Tokenizer()
.setInputCols("sentence")
.setOutputCol("token")
val account_contextual_parser = ContextualParserModel.pretrained("account_parser","en","clinical/models")
.setInputCols(Array("sentence", "token"))
.setOutputCol("chunk_account")
val chunk_converter = new ChunkConverter()
.setInputCols("chunk_account")
.setOutputCol("ner_chunk")
val parserPipeline = new Pipeline().setStages(Array(
document_assembler,
sentence_detector,
tokenizer,
account_contextual_parser,
chunk_converter
))
sample_text = """Name : Hendrickson, Ora, Record date: 2093-01-13, # 719435.
Dr. John Green, ID: 1231511863, IP 203.120.223.13. account: 1234567890120 route number: 123567
He is a 60-year-old male was admitted to the Day Hospital for cystectomy on 01/13/93.
Patient's VIN : 1HGBH41JXMN109286, SSN #333-44-6666, Driver's license no:A334455B.
Phone (302) 786-5227, 0295 Keats Street, San Francisco, E-MAIL: smith@gmail.com.
Additional account: 9876543210987 for billing purposes.
Secondary account number: 4567890123456 linked to insurance.
Backup account: 7890123456789 for emergency payments."""
val data = Seq(sample_text).toDF("text")
val results = parserPipeline.fit(data).transform(data)
Results
| chunk | begin | end | label |
|--------------:|--------:|------:|:--------|
| 1234567890120 | 120 | 132 | ACCOUNT |
| 123567 | 148 | 153 | ACCOUNT |
| 9876543210987 | 425 | 437 | ACCOUNT |
| 4567890123456 | 487 | 499 | ACCOUNT |
| 7890123456789 | 538 | 550 | ACCOUNT |
Model Information
| Model Name: | account_parser |
| Compatibility: | Healthcare NLP 6.2.2+ |
| License: | Licensed |
| Edition: | Official |
| Input Labels: | [document, token_doc] |
| Output Labels: | [entity_account] |
| Language: | en |
| Size: | 4.4 KB |
| Case sensitive: | false |