Pipeline for Extracting Clinical Entities Related to HCC Codes

Description

This pipeline is designed to extract all entities mappable to HCC codes.

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How to use


from sparknlp.pretrained import PretrainedPipeline

ner_pipeline = PretrainedPipeline("ner_hcc_pipeline", "en", "clinical/models")

result = ner_pipeline.annotate("""The patient's medical record indicates a diagnosis of Diabetes and Chronic Obstructive Pulmonary Disease, requiring comprehensive care and management.""")


import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline

val ner_pipeline = PretrainedPipeline("ner_hcc_pipeline", "en", "clinical/models")

val result = ner_pipeline.annotate("""The patient's medical record indicates a diagnosis of Diabetes and Chronic Obstructive Pulmonary Disease, requiring comprehensive care and management.""")

Results

|    | chunks                                |   begin |   end | entities   |
|---:|:--------------------------------------|--------:|------:|:-----------|
|  0 | Diabetes                              |      55 |    62 | PROBLEM    |
|  1 | Chronic Obstructive Pulmonary Disease |      68 |   104 | PROBLEM    |

Model Information

Model Name: ner_hcc_pipeline
Type: pipeline
Compatibility: Healthcare NLP 6.0.2+
License: Licensed
Edition: Official
Language: en
Size: 1.7 GB

Included Models

  • DocumentAssembler
  • SentenceDetectorDLModel
  • TokenizerModel
  • WordEmbeddingsModel
  • MedicalNerModel
  • NerConverterInternalModel