Detect Treatment Entities (TREATMENT)

import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline

val ner_pipeline = PretrainedPipeline("ner_treatment_benchmark_pipeline", "en", "clinical/models")

val text = """IN SUMMARY :
The patient was assessed as a 72 year old woman with a background of stage IIIC ovarian carcinoma and documented local recurrence who presents for line 2 of cycle 1 chemotherapy with Adriamycin , Ifex and MESNA .
She also has a low-grade fever of unknown etiology , has a background history of deep venous thrombosis and is therefore currently on anticoagulation and she shows evidence of dehydration and failure to thrive .
It was decided at that time to hold off with the chemotherapy .
The patient was started on Ampicillin and Gentamicin for urinary tract infection which ultimately grew out Escherichia coli sensitive to the above antibiotics and for right lower lobe pneumonia on x-ray .
She was started on nebulizers around-the-clock and chest physical therapy .
On 6/5/94 they were 21 and 2.2 respectively .
Her Coumadin anticoagulation was adjusted to give a prothrombin time between 16 and 18 and an I and R of 2.5-3 .
On June 5 , 1994 it was decided that Mrs. Neathe was not stable enough with a line 2 cycle I chemotherapy with Ifex , Adriamycin and MESNA .
She was therefore well hydrated and was started on her chemotherapy .
In view of her kidney damage it was suggested to change her intravenous antibiotics from Ancef and Gentamicin to Ancef and ciprofloxacin which she tolerated well .
A Neuro-Oncology consult was sought which felt this was probably secondary to Ifex intoxication and her chemotherapy was stopped .
An electroencephalogram was requested and was negative .
No computerized tomography scan or magnetic resonance imaging study of the head was performed .
"""

val result = ner_pipeline.fullAnnotate(text)