Pipeline to Extract Mentions of Response to Cancer Treatment

Description

This pretrained pipeline is built on the top of ner_oncology_response_to_treatment model.

Predicted Entities

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How to use

from sparknlp.pretrained import PretrainedPipeline

pipeline = PretrainedPipeline("ner_oncology_response_to_treatment_pipeline", "en", "clinical/models")

text = '''She completed her first-line therapy, but some months later there was recurrence of the breast cancer.'''

result = pipeline.fullAnnotate(text)
import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline

val pipeline = new PretrainedPipeline("ner_oncology_response_to_treatment_pipeline", "en", "clinical/models")

val text = "She completed her first-line therapy, but some months later there was recurrence of the breast cancer."

val result = pipeline.fullAnnotate(text)
from sparknlp.pretrained import PretrainedPipeline

pipeline = PretrainedPipeline("ner_oncology_response_to_treatment_pipeline", "en", "clinical/models")

text = '''She completed her first-line therapy, but some months later there was recurrence of the breast cancer.'''

result = pipeline.fullAnnotate(text)

Results

|    | ner_chunks   |   begin |   end | ner_label             |   confidence |
|---:|:-------------|--------:|------:|:----------------------|-------------:|
|  0 | recurrence   |      70 |    79 | Response_To_Treatment |       0.9767 |

Model Information

Model Name: ner_oncology_response_to_treatment_pipeline
Type: pipeline
Compatibility: Healthcare NLP 4.4.4+
License: Licensed
Edition: Official
Language: en
Size: 1.7 GB

Included Models

  • DocumentAssembler
  • SentenceDetectorDLModel
  • TokenizerModel
  • WordEmbeddingsModel
  • MedicalNerModel
  • NerConverterInternalModel