Description
This pretrained pipeline is built on the top of bert_token_classifier_ner_ade model.
Predicted Entities
ADE, DRUG
How to use
from sparknlp.pretrained import PretrainedPipeline
pipeline = PretrainedPipeline("bert_token_classifier_ner_ade_pipeline", "en", "clinical/models")
text = '''I have an allergic reaction to vancomycin so I have itchy skin, sore throat/burning/itching, numbness of tongue and gums. I would not recommend this drug to anyone, especially since I have never had such an adverse reaction to any other medication.'''
result = pipeline.fullAnnotate(text)
import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline
val pipeline = new PretrainedPipeline("bert_token_classifier_ner_ade_pipeline", "en", "clinical/models")
val text = "I have an allergic reaction to vancomycin so I have itchy skin, sore throat/burning/itching, numbness of tongue and gums. I would not recommend this drug to anyone, especially since I have never had such an adverse reaction to any other medication."
val result = pipeline.fullAnnotate(text)
import nlu
nlu.load("en.classify.token_bert.ade_pipeline").predict("""I have an allergic reaction to vancomycin so I have itchy skin, sore throat/burning/itching, numbness of tongue and gums. I would not recommend this drug to anyone, especially since I have never had such an adverse reaction to any other medication.""")
Results
|sentence_id|chunk |begin|end|ner_label|
+-----------+---------------------------+-----+---+---------+
|0 |allergic reaction |10 |26 |ADE |
|0 |vancomycin |31 |40 |DRUG |
|0 |itchy skin |52 |61 |ADE |
|0 |sore throat/burning/itching|64 |90 |ADE |
|0 |numbness of tongue and gums|93 |119|ADE |
|1 |other |231 |235|DRUG |
|1 |medication |237 |246|DRUG |
Model Information
| Model Name: | bert_token_classifier_ner_ade_pipeline |
| Type: | pipeline |
| Compatibility: | Healthcare NLP 4.4.4+ |
| License: | Licensed |
| Edition: | Official |
| Language: | en |
| Size: | 404.9 MB |
Included Models
- DocumentAssembler
- SentenceDetectorDLModel
- TokenizerModel
- MedicalBertForTokenClassifier
- NerConverterInternalModel