Drug Side Effect Classification Pipeline - Voice of the Patient

Description

This pretrained pipeline includes the Medical Bert for Sequence Classification model to classify health-related text in colloquial language according to the presence or absence of mentions of side effects related to drugs. The pipeline is built on the top of bert_sequence_classifier_vop_drug_side_effect model.

Live Demo Open in Colab Copy S3 URI

How to use

from sparknlp.pretrained import PretrainedPipeline

pipeline = PretrainedPipeline("bert_sequence_classifier_vop_drug_side_effect_pipeline", "en", "clinical/models")

pipeline.annotate("I felt kind of dizzy after taking that medication for a month.")
import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline

val pipeline = new PretrainedPipeline("bert_sequence_classifier_vop_drug_side_effect_pipeline", "en", "clinical/models")

val result = pipeline.annotate(I felt kind of dizzy after taking that medication for a month.)

Results

| text                                                           | prediction   |
|:---------------------------------------------------------------|:-------------|
| I felt kind of dizzy after taking that medication for a month. | Drug_AE      |

Model Information

Model Name: bert_sequence_classifier_vop_drug_side_effect_pipeline
Type: pipeline
Compatibility: Healthcare NLP 4.4.3+
License: Licensed
Edition: Official
Language: en
Size: 406.4 MB

Included Models

  • DocumentAssembler
  • TokenizerModel
  • MedicalBertForSequenceClassification