Pipeline to Detect Mentions of Tumors in Text

Description

This pretrained pipeline is built on the top of nerdl_tumour_demo model.

Predicted Entities

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How to use

from sparknlp.pretrained import PretrainedPipeline

pipeline = PretrainedPipeline("nerdl_tumour_demo_pipeline", "en", "clinical/models")

text = '''The final diagnosis was metastatic breast carcinoma, and it was classified as T2N1M1 stage IV. The histological grade of this 4 cm tumor was grade 2.'''

result = pipeline.fullAnnotate(text)
import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline

val pipeline = new PretrainedPipeline("nerdl_tumour_demo_pipeline", "en", "clinical/models")

val text = "The final diagnosis was metastatic breast carcinoma, and it was classified as T2N1M1 stage IV. The histological grade of this 4 cm tumor was grade 2."

val result = pipeline.fullAnnotate(text)

Results

|    | ner_chunks       |   begin |   end | ner_label    | confidence   |
|---:|:-----------------|--------:|------:|:-------------|:-------------|
|  0 | breast carcinoma |      35 |    50 | Localization |              |

Model Information

Model Name: nerdl_tumour_demo_pipeline
Type: pipeline
Compatibility: Healthcare NLP 4.4.4+
License: Licensed
Edition: Official
Language: en
Size: 1.7 GB

Included Models

  • DocumentAssembler
  • SentenceDetectorDLModel
  • TokenizerModel
  • WordEmbeddingsModel
  • MedicalNerModel
  • NerConverterInternalModel