NER Pipeline for Treatments - Voice of the Patient

Description

This pipeline extracts mentions of treatment entities from health-related text in colloquial language.

Live Demo Open in Colab Copy S3 URI

How to use

from sparknlp.pretrained import PretrainedPipeline

pipeline = PretrainedPipeline("ner_vop_treatment_pipeline", "en", "clinical/models")

pipeline.annotate("
My grandpa was diagnosed with type 2 diabetes and had to make some changes to his lifestyle. He also takes metformin and glipizide to help regulate his blood sugar levels. It's been a bit of an adjustment, but he's doing well.
")
import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline

val pipeline = new PretrainedPipeline("ner_vop_treatment_pipeline", "en", "clinical/models")

val result = pipeline.annotate("
My grandpa was diagnosed with type 2 diabetes and had to make some changes to his lifestyle. He also takes metformin and glipizide to help regulate his blood sugar levels. It's been a bit of an adjustment, but he's doing well.
")

Results

| chunk     | ner_label   |
|:----------|:------------|
| metformin | Drug        |
| glipizide | Drug        |

Model Information

Model Name: ner_vop_treatment_pipeline
Type: pipeline
Compatibility: Healthcare NLP 4.4.3+
License: Licensed
Edition: Official
Language: en
Size: 791.6 MB

Included Models

  • DocumentAssembler
  • SentenceDetectorDLModel
  • TokenizerModel
  • WordEmbeddingsModel
  • MedicalNerModel
  • NerConverter