NER Pipeline for Clinical Problems - Voice of the Patient

Description

This pipeline extracts mentions of clinical problems from health-related text in colloquial language.

Live Demo Open in Colab Copy S3 URI

How to use

from sparknlp.pretrained import PretrainedPipeline

pipeline = PretrainedPipeline("ner_vop_problem_pipeline", "en", "clinical/models")

pipeline.annotate("
I've been experiencing joint pain and fatigue lately, so I went to the rheumatology department. After some tests, they diagnosed me with rheumatoid arthritis and started me on a treatment plan to manage the symptoms.
")
import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline

val pipeline = new PretrainedPipeline("ner_vop_problem_pipeline", "en", "clinical/models")

val result = pipeline.annotate("
I've been experiencing joint pain and fatigue lately, so I went to the rheumatology department. After some tests, they diagnosed me with rheumatoid arthritis and started me on a treatment plan to manage the symptoms.
")

Results

| chunk                | ner_label   |
|:---------------------|:------------|
| pain                 | Symptom     |
| fatigue              | Symptom     |
| rheumatoid arthritis | Disease     |

Model Information

Model Name: ner_vop_problem_pipeline
Type: pipeline
Compatibility: Healthcare NLP 4.4.3+
License: Licensed
Edition: Official
Language: en
Size: 791.6 MB

Included Models

  • DocumentAssembler
  • SentenceDetectorDLModel
  • TokenizerModel
  • WordEmbeddingsModel
  • MedicalNerModel
  • NerConverter