Pipeline to Summarize Clinical Notes

Description

This pretrained pipeline is built on the top of summarizer_clinical_jsl model.

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How to use

from sparknlp.pretrained import PretrainedPipeline

pipeline = PretrainedPipeline("summarizer_clinical_jsl_pipeline", "en", "clinical/models")

text = """Patient with hypertension, syncope, and spinal stenosis - for recheck.
(Medical Transcription Sample Report)
SUBJECTIVE:
The patient is a 78-year-old female who returns for recheck. She has hypertension. She denies difficulty with chest pain, palpations, orthopnea, nocturnal dyspnea, or edema.
PAST MEDICAL HISTORY / SURGERY / HOSPITALIZATIONS:
Reviewed and unchanged from the dictation on 12/03/2003.
MEDICATIONS:
Atenolol 50 mg daily, Premarin 0.625 mg daily, calcium with vitamin D two to three pills daily, multivitamin daily, aspirin as needed, and TriViFlor 25 mg two pills daily. She also has Elocon cream 0.1% and Synalar cream 0.01% that she uses as needed for rash.
"""

result = pipeline.fullAnnotate(text)
import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline

val pipeline = new PretrainedPipeline("summarizer_clinical_jsl_pipeline", "en", "clinical/models")

val text = """Patient with hypertension, syncope, and spinal stenosis - for recheck.
(Medical Transcription Sample Report)
SUBJECTIVE:
The patient is a 78-year-old female who returns for recheck. She has hypertension. She denies difficulty with chest pain, palpations, orthopnea, nocturnal dyspnea, or edema.
PAST MEDICAL HISTORY / SURGERY / HOSPITALIZATIONS:
Reviewed and unchanged from the dictation on 12/03/2003.
MEDICATIONS:
Atenolol 50 mg daily, Premarin 0.625 mg daily, calcium with vitamin D two to three pills daily, multivitamin daily, aspirin as needed, and TriViFlor 25 mg two pills daily. She also has Elocon cream 0.1% and Synalar cream 0.01% that she uses as needed for rash.
"""

val result = pipeline.fullAnnotate(text)

Results


A 78-year-old female with hypertension, syncope, and spinal stenosis returns for recheck. She denies chest pain, palpations, orthopnea, nocturnal dyspnea, or edema. She is on multiple medications and has Elocon cream and Synalar cream for rash.

Model Information

Model Name: summarizer_clinical_jsl_pipeline
Type: pipeline
Compatibility: Healthcare NLP 4.4.2+
License: Licensed
Edition: Official
Language: en
Size: 936.7 MB

Included Models

  • DocumentAssembler
  • MedicalSummarizer