Description
This pretrained pipeline is built on the top of bert_token_classifier_ner_deid model.
Predicted Entities
AGE, BIOID, CITY, COUNTRY, DATE, DEVICE, DOCTOR, EMAIL, FAX, HEALTHPLAN, HOSPITAL, IDNUM, LOCATION-OTHER, MEDICALRECORD, ORGANIZATION, PATIENT, PHONE, PROFESSION, STATE, STREET, URL, USERNAME, ZIP
How to use
from sparknlp.pretrained import PretrainedPipeline
pipeline = PretrainedPipeline("bert_token_classifier_ner_deid_pipeline", "en", "clinical/models")
text = '''A. Record date : 2093-01-13, David Hale, M.D. Name : Hendrickson, Ora MR. # 7194334. PCP : Oliveira, non-smoking. Cocke County Baptist Hospital. 0295 Keats Street. Phone +1 (302) 786-5227. Patient's complaints first surfaced when he started working for Brothers Coal-Mine.'''
result = pipeline.fullAnnotate(text)
import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline
val pipeline = new PretrainedPipeline("bert_token_classifier_ner_deid_pipeline", "en", "clinical/models")
val text = "A. Record date : 2093-01-13, David Hale, M.D. Name : Hendrickson, Ora MR. # 7194334. PCP : Oliveira, non-smoking. Cocke County Baptist Hospital. 0295 Keats Street. Phone +1 (302) 786-5227. Patient's complaints first surfaced when he started working for Brothers Coal-Mine."
val result = pipeline.fullAnnotate(text)
import nlu
nlu.load("en.classify.token_bert.ner_deid.pipeline").predict("""A. Record date : 2093-01-13, David Hale, M.D. Name : Hendrickson, Ora MR. # 7194334. PCP : Oliveira, non-smoking. Cocke County Baptist Hospital. 0295 Keats Street. Phone +1 (302) 786-5227. Patient's complaints first surfaced when he started working for Brothers Coal-Mine.""")
Results
| | ner_chunk | begin | end | ner_label | confidence |
|---:|:------------------------------|--------:|------:|:--------------|-------------:|
| 0 | 2093-01-13 | 17 | 26 | DATE | 0.957256 |
| 1 | David Hale | 29 | 38 | DOCTOR | 0.983641 |
| 2 | Hendrickson, Ora | 53 | 68 | PATIENT | 0.992943 |
| 3 | 7194334 | 76 | 82 | MEDICALRECORD | 0.999349 |
| 4 | Oliveira | 91 | 98 | DOCTOR | 0.763455 |
| 5 | Cocke County Baptist Hospital | 114 | 142 | HOSPITAL | 0.999558 |
| 6 | 0295 Keats Street | 145 | 161 | STREET | 0.997889 |
| 7 | 302) 786-5227 | 174 | 186 | PHONE | 0.970114 |
| 8 | Brothers Coal-Mine | 253 | 270 | ORGANIZATION | 0.998911 |
Model Information
| Model Name: | bert_token_classifier_ner_deid_pipeline |
| Type: | pipeline |
| Compatibility: | Healthcare NLP 4.3.0+ |
| License: | Licensed |
| Edition: | Official |
| Language: | en |
| Size: | 405.0 MB |
Included Models
- DocumentAssembler
- SentenceDetectorDLModel
- TokenizerModel
- MedicalBertForTokenClassifier
- NerConverterInternalModel