Description
This pretrained pipeline is built on the top of ner_clinical model.
How to use
from sparknlp.pretrained import PretrainedPipeline
pipeline = PretrainedPipeline("ner_clinical_pipeline", "ro", "clinical/models")
text = ''' Solicitare: Angio CT cardio-toracic Dg. de trimitere Atrezie de valva pulmonara. Hipoplazie VS. Atrezie VAV stang. Anastomoza Glenn. Sp. Tromboza la nivelul anastomozei. Trimis de: Sectia Clinica Cardiologie (dr. Sue T.) Procedura Aparat GE Revolution HD. Branula albastra montata la nivelul membrului superior drept. Se administreaza 30 ml Iomeron 350 cu flux 2.2 ml/s, urmate de 20 ml ser fiziologic cu acelasi flux. Se efectueaza o examinare angio-CT cardiotoracica cu achizitii secventiale prospective la o frecventa cardiaca medie de 100/min.'''
result = pipeline.fullAnnotate(text)
import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline
val pipeline = new PretrainedPipeline("ner_clinical_pipeline", "ro", "clinical/models")
val text = " Solicitare: Angio CT cardio-toracic Dg. de trimitere Atrezie de valva pulmonara. Hipoplazie VS. Atrezie VAV stang. Anastomoza Glenn. Sp. Tromboza la nivelul anastomozei. Trimis de: Sectia Clinica Cardiologie (dr. Sue T.) Procedura Aparat GE Revolution HD. Branula albastra montata la nivelul membrului superior drept. Se administreaza 30 ml Iomeron 350 cu flux 2.2 ml/s, urmate de 20 ml ser fiziologic cu acelasi flux. Se efectueaza o examinare angio-CT cardiotoracica cu achizitii secventiale prospective la o frecventa cardiaca medie de 100/min."
val result = pipeline.fullAnnotate(text)
Results
| | ner_chunks | begin | end | ner_label | confidence |
|---:|:----------------------------------|--------:|------:|:--------------------------|-------------:|
| 0 | Angio CT | 13 | 20 | Imaging_Test | 0.92675 |
| 1 | cardio-toracic | 22 | 35 | Body_Part | 0.9854 |
| 2 | Atrezie | 54 | 60 | Disease_Syndrome_Disorder | 0.9985 |
| 3 | valva pulmonara | 65 | 79 | Body_Part | 0.9271 |
| 4 | Hipoplazie | 82 | 91 | Disease_Syndrome_Disorder | 0.9926 |
| 5 | VS | 93 | 94 | Body_Part | 0.9984 |
| 6 | Atrezie | 97 | 103 | Disease_Syndrome_Disorder | 0.9607 |
| 7 | VAV stang | 105 | 113 | Body_Part | 0.94825 |
| 8 | Anastomoza Glenn | 116 | 131 | Disease_Syndrome_Disorder | 0.9787 |
| 9 | Sp | 134 | 135 | Body_Part | 0.8138 |
| 10 | Tromboza | 138 | 145 | Disease_Syndrome_Disorder | 0.9986 |
| 11 | Sectia Clinica Cardiologie | 182 | 207 | Clinical_Dept | 0.8721 |
| 12 | GE Revolution HD | 239 | 254 | Medical_Device | 0.999133 |
| 13 | Branula albastra | 257 | 272 | Medical_Device | 0.98465 |
| 14 | membrului superior | 293 | 310 | Body_Part | 0.9793 |
| 15 | drept | 312 | 316 | Direction | 0.7679 |
| 16 | 30 ml | 336 | 340 | Dosage | 0.99775 |
| 17 | Iomeron 350 | 342 | 352 | Drug_Ingredient | 0.9878 |
| 18 | 2.2 ml/s | 362 | 369 | Dosage | 0.9599 |
| 19 | 20 ml | 382 | 386 | Dosage | 0.99515 |
| 20 | ser fiziologic | 388 | 401 | Drug_Ingredient | 0.9802 |
| 21 | angio-CT | 446 | 453 | Imaging_Test | 0.9843 |
| 22 | cardiotoracica | 455 | 468 | Body_Part | 0.9995 |
| 23 | achizitii secventiale prospective | 473 | 505 | Imaging_Technique | 0.8514 |
| 24 | 100/min | 540 | 546 | Pulse | 0.8501 |
Model Information
| Model Name: | ner_clinical_pipeline |
| Type: | pipeline |
| Compatibility: | Healthcare NLP 4.3.0+ |
| License: | Licensed |
| Edition: | Official |
| Language: | ro |
| Size: | 1.2 GB |
Included Models
- DocumentAssembler
- SentenceDetectorDLModel
- TokenizerModel
- WordEmbeddingsModel
- MedicalNerModel
- NerConverterInternalModel