Description
This pretrained pipeline is built on the top of re_bodypart_directions model.
Live Demo Open in Colab Copy S3 URI
How to use
from sparknlp.pretrained import PretrainedPipeline
pipeline = PretrainedPipeline("re_bodypart_directions_pipeline", "en", "clinical/models")
pipeline.fullAnnotate("MRI demonstrated infarction in the upper brain stem , left cerebellum and right basil ganglia")
import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline
val pipeline = new PretrainedPipeline("re_bodypart_directions_pipeline", "en", "clinical/models")
pipeline.fullAnnotate("MRI demonstrated infarction in the upper brain stem , left cerebellum and right basil ganglia")
import nlu
nlu.load("en.relation.bodypart_directions.pipeline").predict("""MRI demonstrated infarction in the upper brain stem , left cerebellum and right basil ganglia""")
Results
| index | relations | entity1 | entity1_begin | entity1_end | chunk1 | entity2 | entity2_end | entity2_end | chunk2 | confidence |
|-------|-----------|-----------------------------|---------------|-------------|------------|-----------------------------|-------------|-------------|---------------|------------|
| 0 | 1 | Direction | 35 | 39 | upper | Internal_organ_or_component | 41 | 50 | brain stem | 0.9999989 |
| 1 | 0 | Direction | 35 | 39 | upper | Internal_organ_or_component | 59 | 68 | cerebellum | 0.99992585 |
| 2 | 0 | Direction | 35 | 39 | upper | Internal_organ_or_component | 81 | 93 | basil ganglia | 0.9999999 |
| 3 | 0 | Internal_organ_or_component | 41 | 50 | brain stem | Direction | 54 | 57 | left | 0.999811 |
| 4 | 0 | Internal_organ_or_component | 41 | 50 | brain stem | Direction | 75 | 79 | right | 0.9998203 |
| 5 | 1 | Direction | 54 | 57 | left | Internal_organ_or_component | 59 | 68 | cerebellum | 1.0 |
| 6 | 0 | Direction | 54 | 57 | left | Internal_organ_or_component | 81 | 93 | basil ganglia | 0.97616416 |
| 7 | 0 | Internal_organ_or_component | 59 | 68 | cerebellum | Direction | 75 | 79 | right | 0.953046 |
| 8 | 1 | Direction | 75 | 79 | right | Internal_organ_or_component | 81 | 93 | basil ganglia | 1.0 |
Model Information
| Model Name: | re_bodypart_directions_pipeline |
| Type: | pipeline |
| Compatibility: | Healthcare NLP 3.4.1+ |
| License: | Licensed |
| Edition: | Official |
| Language: | en |
| Size: | 1.7 GB |
Included Models
- DocumentAssembler
- SentenceDetector
- TokenizerModel
- PerceptronModel
- WordEmbeddingsModel
- MedicalNerModel
- NerConverter
- DependencyParserModel
- RelationExtractionModel