Description
This pretrained pipeline is built on the top of ner_healthcare model.
Predicted Entities
DRUG, ADE
Live Demo Open in Colab Copy S3 URI
How to use
from sparknlp.pretrained import PretrainedPipeline
pipeline = PretrainedPipeline("ner_healthcare_pipeline", "en", "clinical/models")
pipeline.fullAnnotate("A 28-year-old female with a history of gestational diabetes mellitus diagnosed eight years prior to presentation and subsequent type two diabetes mellitus ( T2DM ), one prior episode of HTG-induced pancreatitis three years prior to presentation , associated with an acute hepatitis , and obesity with a body mass index ( BMI ) of 33.5 kg/m2 , presented with a one-week history of polyuria , polydipsia , poor appetite , and vomiting . Two weeks prior to presentation , she was treated with a five-day course of amoxicillin for a respiratory tract infection . She was on metformin , glipizide , and dapagliflozin for T2DM and atorvastatin and gemfibrozil for HTG .")
import com.johnsnowlabs.nlp.pretrained.PretrainedPipeline
val pipeline = new PretrainedPipeline("ner_healthcare_pipeline", "en", "clinical/models")
pipeline.fullAnnotate("A 28-year-old female with a history of gestational diabetes mellitus diagnosed eight years prior to presentation and subsequent type two diabetes mellitus ( T2DM ), one prior episode of HTG-induced pancreatitis three years prior to presentation , associated with an acute hepatitis , and obesity with a body mass index ( BMI ) of 33.5 kg/m2 , presented with a one-week history of polyuria , polydipsia , poor appetite , and vomiting . Two weeks prior to presentation , she was treated with a five-day course of amoxicillin for a respiratory tract infection . She was on metformin , glipizide , and dapagliflozin for T2DM and atorvastatin and gemfibrozil for HTG .")
import nlu
nlu.load("en.med_ner.healthcare_pipeline").predict("""A 28-year-old female with a history of gestational diabetes mellitus diagnosed eight years prior to presentation and subsequent type two diabetes mellitus ( T2DM ), one prior episode of HTG-induced pancreatitis three years prior to presentation , associated with an acute hepatitis , and obesity with a body mass index ( BMI ) of 33.5 kg/m2 , presented with a one-week history of polyuria , polydipsia , poor appetite , and vomiting . Two weeks prior to presentation , she was treated with a five-day course of amoxicillin for a respiratory tract infection . She was on metformin , glipizide , and dapagliflozin for T2DM and atorvastatin and gemfibrozil for HTG .""")
Results
+-----------------------------+---------+
|chunks |entities |
+-----------------------------+---------+
|gestational diabetes mellitus|PROBLEM |
|type two diabetes mellitus |PROBLEM |
|HTG-induced pancreatitis |PROBLEM |
|an acute hepatitis |PROBLEM |
|obesity |PROBLEM |
|a body mass index |TEST |
|BMI |TEST |
|polyuria |PROBLEM |
|polydipsia |PROBLEM |
|poor appetite |PROBLEM |
|vomiting |PROBLEM |
|amoxicillin |TREATMENT|
|a respiratory tract infection|PROBLEM |
|metformin |TREATMENT|
|glipizide |TREATMENT|
+-----------------------------+---------+
Model Information
| Model Name: | ner_healthcare_pipeline |
| Type: | pipeline |
| Compatibility: | Healthcare NLP 3.4.1+ |
| License: | Licensed |
| Edition: | Official |
| Language: | en |
| Size: | 513.5 MB |
Included Models
- DocumentAssembler
- SentenceDetectorDLModel
- TokenizerModel
- WordEmbeddingsModel
- MedicalNerModel
- NerConverter