Description
This pretrained pipeline is built on the top of bert_token_classifier_ner_deid model.
Live Demo Open in Colab Copy S3 URI
How to use
from sparknlp.pretrained import PretrainedPipeline
pipeline = PretrainedPipeline("bert_token_classifier_ner_deid_pipeline", "en", "clinical/models")
pipeline.annotate("A. Record date : 2093-01-13, David Hale, M.D. Name : Hendrickson, Ora MR. # 7194334. PCP : Oliveira, non-smoking. Cocke County Baptist Hospital. 0295 Keats Street. Phone +1 (302) 786-5227. Patient's complaints first surfaced when he started working for Brothers Coal-Mine.")
val pipeline = new PretrainedPipeline("bert_token_classifier_ner_deid_pipeline", "en", "clinical/models")
pipeline.annotate("A. Record date : 2093-01-13, David Hale, M.D. Name : Hendrickson, Ora MR. # 7194334. PCP : Oliveira, non-smoking. Cocke County Baptist Hospital. 0295 Keats Street. Phone +1 (302) 786-5227. Patient's complaints first surfaced when he started working for Brothers Coal-Mine.")
import nlu
nlu.load("en.classify.token_bert.ner_deid.pipeline").predict("""A. Record date : 2093-01-13, David Hale, M.D. Name : Hendrickson, Ora MR. # 7194334. PCP : Oliveira, non-smoking. Cocke County Baptist Hospital. 0295 Keats Street. Phone +1 (302) 786-5227. Patient's complaints first surfaced when he started working for Brothers Coal-Mine.""")
Results
+-----------------------------+-------------+
|chunk |ner_label |
+-----------------------------+-------------+
|2093-01-13 |DATE |
|David Hale |DOCTOR |
|Hendrickson, Ora |PATIENT |
|7194334 |MEDICALRECORD|
|Oliveira |PATIENT |
|Cocke County Baptist Hospital|HOSPITAL |
|0295 Keats Street |STREET |
|302) 786-5227 |PHONE |
|Brothers Coal-Mine |ORGANIZATION |
+-----------------------------+-------------+
Model Information
| Model Name: | bert_token_classifier_ner_deid_pipeline |
| Type: | pipeline |
| Compatibility: | Healthcare NLP 3.4.1+ |
| License: | Licensed |
| Edition: | Official |
| Language: | en |
| Size: | 404.8 MB |
Included Models
- DocumentAssembler
- SentenceDetectorDLModel
- TokenizerModel
- MedicalBertForTokenClassifier
- NerConverter